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Diverse Validation enhancements#31

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RichardBruskiewich merged 15 commits intomasterNCATSTranslator/reasoner-validator:masterfrom validation-enhancementsNCATSTranslator/reasoner-validator:validation-enhancementsCopy head branch name to clipboardAug 12, 2022

+362-122

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Commits on Aug 5, 2022

• validating the attribute_type_id as an association_slot (--> breaking change since validation method doesn't yet exist in BMT! Just saving the intent for now...)

  RichardBruskiewich

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• validating the attribute_type_id as an association_slot (--> breaking change since validation method doesn't yet exist in BMT! Just saving the intent for now...)

  RichardBruskiewich

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• Merge remote-tracking branch 'origin/issue-19-edge-attribute-validation' into issue-19-edge-attribute-validation

  RichardBruskiewich

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Commits on Aug 8, 2022

• Upgrade BMT; adding attribute test back in (but need to iterate)

  RichardBruskiewich

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• Updated default testing Biolink Model to 2.4.8 and fix constructor biolink_version parameter to be more explicitly Optional[str]

  RichardBruskiewich

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Commits on Aug 10, 2022

• Merge branch 'master' into issue-19-edge-attribute-validation

  RichardBruskiewich

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Commits on Aug 11, 2022

• pip dependency to patch version of BMT 0.8.4 plus refactoring of biolink validation of test input edges to check for deprecated classes

  RichardBruskiewich

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• Add input test edge check for mixin

  RichardBruskiewich

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• test for abstract categories in the input edge test data

  RichardBruskiewich

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• DRY refactoring of category validation to reduce code duplication in input edge validation and also, reuse common code in graph validations; unit test messages fixed

  RichardBruskiewich

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• Add unit test for attribute_type_id is_a 'biolink:association_slot'

  RichardBruskiewich

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• Validating the attribute_type_id to 1) be a CURIE and 2) be a known prefix (already testing if it is a proper association_slot)

  RichardBruskiewich

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Commits on Aug 12, 2022

• Merge branch 'master' into validation-enhancements

  RichardBruskiewich

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• updated tests README

  RichardBruskiewich

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• tests README updated; simpler main.py tests for empty TRAPI message components; check for missing TRAPI Attribute 'attribute_type_id' and 'value' fields.

  RichardBruskiewich

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