Allow '-' in the TMT sample name.

Also unify the pattern for the sample name and reference tag.
Nesvilab · Jan 13, 2023 · b2ce3ee · b2ce3ee
1 parent dec9f54
commit b2ce3ee
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/MSFragger-GUI/src/com/dmtavt/fragpipe/tools/tmtintegrator/QuantLabelAnnotation.java b/MSFragger-GUI/src/com/dmtavt/fragpipe/tools/tmtintegrator/QuantLabelAnnotation.java
@@ -22,7 +22,7 @@
 
 public class QuantLabelAnnotation {
 
-  private static Pattern disallowedPattern = Pattern.compile("[^0-9a-zA-Z_]");
+  public static final Pattern disallowedPattern = Pattern.compile("[^0-9a-zA-Z_-]");
 
   private String label;
   private String sample;

diff --git a/MSFragger-GUI/src/com/dmtavt/fragpipe/tools/tmtintegrator/TmtiPanel.java b/MSFragger-GUI/src/com/dmtavt/fragpipe/tools/tmtintegrator/TmtiPanel.java
@@ -17,6 +17,7 @@
 
 package com.dmtavt.fragpipe.tools.tmtintegrator;
 
+import static com.dmtavt.fragpipe.tools.tmtintegrator.QuantLabelAnnotation.disallowedPattern;
 import static com.dmtavt.fragpipe.tools.tmtintegrator.QuantLabelAnnotation.unifyAnnotationSampleName;
 
 import com.dmtavt.fragpipe.api.Bus;
@@ -313,7 +314,7 @@ private JPanel createPanelOptsBasic() {
     uiSpinnerTolerance = UiUtils.spinnerInt(20, 1, 9999, 1).create();
     FormEntry feTolerance = fe("tolerance", "Mass tolerance (ppm)", uiSpinnerTolerance, "Reporter ions mass tolerance in PPM");
 
-    UiText uiTextRefTag = UiUtils.uiTextBuilder().cols(10).filter("[^0-9a-zA-Z_]").text("Bridge").create();
+    UiText uiTextRefTag = UiUtils.uiTextBuilder().cols(10).filter(disallowedPattern.toString()).text("Bridge").create();
     FormEntry feRefTag = fe(TmtiConfProps.PROP_ref_tag,
         "Ref sample tag", uiTextRefTag,
         "<html>Unique tag to identify reference (bridge) channels");