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add versions specification v0.2.1
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chiarasch committed Aug 7, 2024
1 parent 8b5f483 commit 583820e
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion scripts/phenoimager2mc.py
Original file line number Diff line number Diff line change
Expand Up @@ -59,6 +59,7 @@ def getOptions(myopts=None):
default="99th",
choices=["99th", "max"],
help="Provide method to normalize marker intensities per channel. Options = [99th, max]")
standard.add_argument("--version", action="version", version="v0.2.1")

# Tool Output
output = parser.add_argument_group(title='Required output')
Expand Down Expand Up @@ -403,6 +404,8 @@ def main(args):
:param args.output: file to save the output .tif files per cycle with OME-XML metadata. Will be created if not existent.
"""
# version
_version = 'v0.2.1'
# Concatenate the tiles into a single stacked image
concatenate_tiles(args.indir, args.output)
# Normalize the image
Expand Down Expand Up @@ -464,7 +467,7 @@ def main(args):

if __name__ == '__main__':
"""Tool is called on the command-line"""

_version = 'v0.2.1'
args = getOptions()
warnings.filterwarnings("ignore", category=DeprecationWarning)

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