Code

Cadd tool#20

Code

Closed

nojux-official wants to merge 22 commits intomainStrexas/kath:mainfrom caddStrexas/kath:caddCopy head branch name to clipboard

+4,764-5,917

Commits

Commits on May 10, 2024

• Implement fetching CADD scores from online database

  nojux-official

  committed
  f4b6473

  Copy full SHA for f4b6473

• documentation of fetch_cadd_score function

  nojux-official

  committed
  a202d46

  Copy full SHA for a202d46

• fetch_cadd_scores for SNV range access

  nojux-official

  committed
  c402083

  Copy full SHA for c402083

• Sample CADD usage in README

  nojux-official

  committed
  ad02e2d

  Copy full SHA for ad02e2d

• Incorrect version in function descriptions

  nojux-official

  committed
  4dae6b5

  Copy full SHA for 4dae6b5

• Enable CADD script to parse arguments

  nojux-official

  committed
  307bce2

  Copy full SHA for 307bce2

• Update CADD's usage

  nojux-official

  committed
  5b2de50

  Copy full SHA for 5b2de50

Commits on May 13, 2024

• Fixing long lines

  nojux-official

  committed
  b49f1e7

  Copy full SHA for b49f1e7

• Added module docstring

  nojux-official

  committed
  4a9d393

  Copy full SHA for 4a9d393

• Facilitating readability

  nojux-official

  committed
  c8d0ace

  Copy full SHA for c8d0ace

• Removing unnecessary else statements

  nojux-official

  committed
  2e81ca4

  Copy full SHA for 2e81ca4

• Renaming to snake case

  nojux-official

  committed
  bf03d3c

  Copy full SHA for bf03d3c

• Defining timeouts for requests

  nojux-official

  committed
  7bbdd87

  Copy full SHA for 7bbdd87

• Standard inputs go first

  nojux-official

  committed
  a711512

  Copy full SHA for a711512

• Make exceptions concrete

  nojux-official

  committed
  b640e10

  Copy full SHA for b640e10

Commits on May 15, 2024

• Added BadResponseException and DownloadError exceptions

  nojux-official

  committed
  beddb4c

  Copy full SHA for beddb4c

• Make cadd functions accessible through tools module

  nojux-official

  committed
  bba37f3

  Copy full SHA for bba37f3

Commits on May 26, 2024

• Cadd usage in pipeline

  nojux-official

  committed
  237e717

  Copy full SHA for 237e717

• Docstring for tools package (__init__)

  nojux-official

  committed
  6ee8402

  Copy full SHA for 6ee8402

Commits on May 28, 2024

• Merge branch 'main' into cadd

  nojux-official

  committed
  e7edd48

  Copy full SHA for e7edd48

• Revert "Merge branch 'main' into cadd"

  Show description for ddfb716
  nojux-official

  committed
  ddfb716

  Copy full SHA for ddfb716

• Preparing to merge with main branch (updating pipeline.ipynb)

  nojux-official

  committed
  8ef9692

  Copy full SHA for 8ef9692