finalizing qmd file and running scripts

README.md

@@ -37,8 +37,7 @@ python scripts/4_training_models.py --train data/processed/train_df.csv --write-
 
 python scripts/5_evaluate.py --train data/processed/train_df.csv --test data/processed/test_df.csv --write-to results
 
-quarto render report/heart_diagnostic_analysis.qmd --to html
-quarto render report/heart_diagnostic_analysis.qmd --to pdf
+quarto render reports/heart_diagnostic_analysis.qmd --to html
 ```
 
 #### 3\. Clean Up

reports/heart_diagnostic_analysis.log

@@ -0,0 +1,266 @@
+This is XeTeX, Version 3.141592653-2.6-0.999993 (TeX Live 2022/dev/Debian) (preloaded format=xelatex 2024.1.17)  8 DEC 2024 18:57
+entering extended mode
+ restricted \write18 enabled.
+ %&-line parsing enabled.
+**heart_diagnostic_analysis.tex
+(./heart_diagnostic_analysis.tex
+LaTeX2e <2021-11-15> patch level 1
+L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/koma
+-script/scrartcl.cls
+Document Class: scrartcl 2021/11/13 v3.35 KOMA-Script document class (article)
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty
+Package: scrkbase 2021/11/13 v3.35 KOMA-Script package (KOMA-Script-dependent b
+asics and keyval usage)
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty
+Package: scrbase 2021/11/13 v3.35 KOMA-Script package (KOMA-Script-independent 
+basics and keyval usage)
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty
+Package: scrlfile 2021/11/13 v3.35 KOMA-Script package (file load hooks)
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
+Package: scrlfile-hook 2021/11/13 v3.35 KOMA-Script package (using LaTeX hooks)
+
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlogo.sty
+Package: scrlogo 2021/11/13 v3.35 KOMA-Script package (logo)
+))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty
+Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
+\KV@toks@=\toks16
+)
+Applying: [2021/05/01] Usage of raw or classic option list on input line 252.
+Already applied: [0000/00/00] Usage of raw or classic option list on input line
+ 368.
+)) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/tocbasic.sty
+Package: tocbasic 2021/11/13 v3.35 KOMA-Script package (handling toc-files)
+\scr@dte@tocline@numberwidth=\skip47
+\scr@dte@tocline@numbox=\box50
+)
+Package tocbasic Info: babel extension for `toc' omitted
+(tocbasic)             because of missing \bbl@set@language on input line 135.
+Class scrartcl Info: File `scrsize11pt.clo' used instead of
+(scrartcl)           file `scrsize11.clo' to setup font sizes on input line 224
+2.
+(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
+File: scrsize11pt.clo 2021/11/13 v3.35 KOMA-Script font size class option (11pt
+)
+) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/typearea.sty
+Package: typearea 2021/11/13 v3.35 KOMA-Script package (type area)
+\ta@bcor=\skip48
+\ta@div=\count181
+Package typearea Info: You've used standard option `letterpaper'.
+(typearea)             This is correct!
+(typearea)             Internally I'm using `paper=letter'.
+(typearea)             If you'd like to set the option with \KOMAoptions,
+(typearea)             you'd have to use `paper=letter' there
+(typearea)             instead of `letterpaper', too.
+\ta@hblk=\skip49
+\ta@vblk=\skip50
+\ta@temp=\skip51
+\footheight=\skip52
+Package typearea Info: These are the values describing the layout:
+(typearea)             DIV  = 11
+(typearea)             BCOR = 0.0pt
+(typearea)             \paperwidth      = 614.295pt
+(typearea)              \textwidth      = 446.76004pt
+(typearea)              DIV departure   = -14%
+(typearea)              \evensidemargin = 11.49748pt
+(typearea)              \oddsidemargin  = 11.49748pt
+(typearea)             \paperheight     = 794.96999pt
+(typearea)              \textheight     = 582.20026pt
+(typearea)              \topmargin      = -37.40001pt
+(typearea)              \headheight     = 17.0pt
+(typearea)              \headsep        = 20.40001pt
+(typearea)              \topskip        = 11.0pt
+(typearea)              \footskip       = 47.6pt
+(typearea)              \baselineskip   = 13.6pt
+(typearea)              on input line 1743.
+)
+\c@part=\count182
+\c@section=\count183
+\c@subsection=\count184
+\c@subsubsection=\count185
+\c@paragraph=\count186
+\c@subparagraph=\count187
+\scr@dte@section@maxnumwidth=\skip53
+Class scrartcl Info: using compatibility default `runin=bysign'
+(scrartcl)           for `\section on input line 4852.
+Class scrartcl Info: using compatibility default `afterindent=bysign'
+(scrartcl)           for `\section on input line 4852.
+\scr@dte@part@maxnumwidth=\skip54
+Class scrartcl Info: using compatibility default `afterindent=false'
+(scrartcl)           for `\part on input line 4860.
+\scr@dte@subsection@maxnumwidth=\skip55
+Class scrartcl Info: using compatibility default `runin=bysign'
+(scrartcl)           for `\subsection on input line 4870.
+Class scrartcl Info: using compatibility default `afterindent=bysign'
+(scrartcl)           for `\subsection on input line 4870.
+\scr@dte@subsubsection@maxnumwidth=\skip56
+Class scrartcl Info: using compatibility default `runin=bysign'
+(scrartcl)           for `\subsubsection on input line 4880.
+Class scrartcl Info: using compatibility default `afterindent=bysign'
+(scrartcl)           for `\subsubsection on input line 4880.
+\scr@dte@paragraph@maxnumwidth=\skip57
+Class scrartcl Info: using compatibility default `runin=bysign'
+(scrartcl)           for `\paragraph on input line 4891.
+Class scrartcl Info: using compatibility default `afterindent=bysign'
+(scrartcl)           for `\paragraph on input line 4891.
+\scr@dte@subparagraph@maxnumwidth=\skip58
+Class scrartcl Info: using compatibility default `runin=bysign'
+(scrartcl)           for `\subparagraph on input line 4901.
+Class scrartcl Info: using compatibility default `afterindent=bysign'
+(scrartcl)           for `\subparagraph on input line 4901.
+\abovecaptionskip=\skip59
+\belowcaptionskip=\skip60
+\c@pti@nb@sid@b@x=\box51
+Package tocbasic Info: babel extension for `lof' omitted
+(tocbasic)             because of missing \bbl@set@language on input line 6076.
+
+\scr@dte@figure@maxnumwidth=\skip61
+\c@figure=\count188
+Package tocbasic Info: babel extension for `lot' omitted
+(tocbasic)             because of missing \bbl@set@language on input line 6091.
+
+\scr@dte@table@maxnumwidth=\skip62
+\c@table=\count189
+Class scrartcl Info: Redefining `\numberline' on input line 6258.
+\bibindent=\dimen138
+) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
+Package: amsmath 2021/10/15 v2.17l AMS math features
+\@mathmargin=\skip63
+For additional information on amsmath, use the `?' option.
+(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
+Package: amstext 2021/08/26 v2.01 AMS text
+(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty
+File: amsgen.sty 1999/11/30 v2.0 generic functions
+\@emptytoks=\toks17
+\ex@=\dimen139
+)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty
+Package: amsbsy 1999/11/29 v1.2d Bold Symbols
+\pmbraise@=\dimen140
+) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
+Package: amsopn 2021/08/26 v2.02 operator names
+)
+\inf@bad=\count190
+LaTeX Info: Redefining \frac on input line 234.
+\uproot@=\count191
+\leftroot@=\count192
+LaTeX Info: Redefining \overline on input line 399.
+\classnum@=\count193
+\DOTSCASE@=\count194
+LaTeX Info: Redefining \ldots on input line 496.
+LaTeX Info: Redefining \dots on input line 499.
+LaTeX Info: Redefining \cdots on input line 620.
+\Mathstrutbox@=\box52
+\strutbox@=\box53
+\big@size=\dimen141
+LaTeX Font Info:    Redeclaring font encoding OML on input line 743.
+LaTeX Font Info:    Redeclaring font encoding OMS on input line 744.
+\macc@depth=\count195
+\c@MaxMatrixCols=\count196
+\dotsspace@=\muskip16
+\c@parentequation=\count197
+\dspbrk@lvl=\count198
+\tag@help=\toks18
+\row@=\count199
+\column@=\count266
+\maxfields@=\count267
+\andhelp@=\toks19
+\eqnshift@=\dimen142
+\alignsep@=\dimen143
+\tagshift@=\dimen144
+\tagwidth@=\dimen145
+\totwidth@=\dimen146
+\lineht@=\dimen147
+\@envbody=\toks20
+\multlinegap=\skip64
+\multlinetaggap=\skip65
+\mathdisplay@stack=\toks21
+LaTeX Info: Redefining \[ on input line 2938.
+LaTeX Info: Redefining \] on input line 2939.
+) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
+Package: amssymb 2013/01/14 v3.01 AMS font symbols
+(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
+Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
+\symAMSa=\mathgroup4
+\symAMSb=\mathgroup5
+LaTeX Font Info:    Redeclaring math symbol \hbar on input line 98.
+LaTeX Font Info:    Overwriting math alphabet `\mathfrak' in version `bold'
+(Font)                  U/euf/m/n --> U/euf/b/n on input line 106.
+)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty
+Package: iftex 2020/03/06 v1.0d TeX engine tests
+) (/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math.sty (/usr/
+share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
+Package: expl3 2022-01-21 L3 programming layer (loader) 
+(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xetex.def
+File: l3backend-xetex.def 2022-01-12 L3 backend support: XeTeX
+(|extractbb --version)
+\c__kernel_sys_dvipdfmx_version_int=\count268
+\l__color_backend_stack_int=\count269
+\g__color_backend_stack_int=\count270
+\g__graphics_track_int=\count271
+\l__pdf_internal_box=\box54
+\g__pdf_backend_object_int=\count272
+\g__pdf_backend_annotation_int=\count273
+\g__pdf_backend_link_int=\count274
+))
+Package: unicode-math 2020/01/31 v0.8q Unicode maths in XeLaTeX and LuaLaTeX
+(/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math-xetex.sty
+Package: unicode-math-xetex 2020/01/31 v0.8q Unicode maths in XeLaTeX and LuaLa
+TeX
+(/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
+Package: xparse 2022-01-12 L3 Experimental document command parser
+) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty
+Package: l3keys2e 2022-01-12 LaTeX2e option processing using LaTeX3 keys
+) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty
+Package: fontspec 2022/01/15 v2.8a Font selection for XeLaTeX and LuaLaTeX
+(/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty
+Package: fontspec-xetex 2022/01/15 v2.8a Font selection for XeLaTeX and LuaLaTe
+X
+\l__fontspec_script_int=\count275
+\l__fontspec_language_int=\count276
+\l__fontspec_strnum_int=\count277
+\l__fontspec_tmp_int=\count278
+\l__fontspec_tmpa_int=\count279
+\l__fontspec_tmpb_int=\count280
+\l__fontspec_tmpc_int=\count281
+\l__fontspec_em_int=\count282
+\l__fontspec_emdef_int=\count283
+\l__fontspec_strong_int=\count284
+\l__fontspec_strongdef_int=\count285
+\l__fontspec_tmpa_dim=\dimen148
+\l__fontspec_tmpb_dim=\dimen149
+\l__fontspec_tmpc_dim=\dimen150
+(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
+Package: fontenc 2021/04/29 v2.0v Standard LaTeX package
+) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg))) (/usr/share
+/texlive/texmf-dist/tex/latex/base/fix-cm.sty
+Package: fix-cm 2020/11/24 v1.1t fixes to LaTeX
+(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
+File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
+LaTeX Font Info:    Redeclaring font encoding TS1 on input line 47.
+))
+\g__um_fam_int=\count286
+\g__um_fonts_used_int=\count287
+\l__um_primecount_int=\count288
+\g__um_primekern_muskip=\muskip17
+(/usr/share/texlive/texmf-dist/tex/latex/unicode-math/unicode-math-table.tex)))
+
+! LaTeX Error: File `lmodern.sty' not found.
+
+Type X to quit or <RETURN> to proceed,
+or enter new name. (Default extension: sty)
+
+Enter file name: 
+! Emergency stop.
+<read *> 
+
+l.23 \ifPDFTeX
+              \else^^M 
+Here is how much of TeX's memory you used:
+ 10282 strings out of 478214
+ 229882 string characters out of 5855576
+ 833926 words of memory out of 5000000
+ 30857 multiletter control sequences out of 15000+600000
+ 469275 words of font info for 30 fonts, out of 8000000 for 9000
+ 14 hyphenation exceptions out of 8191
+ 108i,1n,106p,10620b,270s stack positions out of 5000i,500n,10000p,200000b,80000s
+
+No pages of output.