Hi there 👋
You may also see my website – abolfazlarab.com
Here are my key projects where I led the effort.
- ezformer | Run enformer like models, get prediction tracks, and perform benchmarking
- Cancer-Cell-Encoder | (ARCHIVED)
- FunGI-cap | Functional Genomics Screening Datasets, Tools, and Resources
- ArcInstitute/ScreenPro2 | Flexible analysis of high-content CRISPR screening
- GilbertLabUCSF/CanDI | Cancer Data Integrator
- GilbertLabUCSF/Decitabine-treatment Bulk and single-cell Multi-Omics tools
- scez | Single Cell Analysis, Easy Mode!
- MultiOmics | A multi-omics analytic framework to study RNA dynamics
- pager | PAGE algorithm run and downstream analysis
- sc-haircut-net | M.Sc. thesis project!
- RNAseq-tutorials, goodarzilab/WES, QuantSeq-FWD-with-UMIs, imRIP, HERVs
Projects at Harvard Medical School - DBMI and Zitnik Lab:
- UDNBioSimilarity | Investigating Biological Similarities among Rare Diseases (not public!)
- mims-harvard/TDC | Artificial intelligence foundation for therapeutic science
- mims-harvard/PrimeKG | Precision Medicine Knowledge Graph (PrimeKG)