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MAF FORMAT #73

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Zhaoqiyue5 opened this issue Jun 24, 2024 · 1 comment
Open

MAF FORMAT #73

Zhaoqiyue5 opened this issue Jun 24, 2024 · 1 comment

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@Zhaoqiyue5
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Hi, Dr. Song
I have an issue where I couldn't directly generate the VCF format using -IV. Therefore, I generated the data in MAF format. How can I extract inversion information from the MAF format, or is there a way to convert the MAF format to another format?
@baoxingsong
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Please refer this document https://github.com/baoxingsong/AnchorWave/blob/master/doc/GATK.md

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@baoxingsong @Zhaoqiyue5