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24 Open 37 Closed
24 Open 37 Closed
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Issues list

Regarding the Issue of Gaps in the Maize Genome Alignment
#78 opened Oct 31, 2024 by gaochenx
2
MAF FORMAT
#73 opened Jun 24, 2024 by Zhaoqiyue5
1
proali Error “line 22: 54565 Killed "${EXE}_avx512" "$@"”
#71 opened Apr 6, 2024 by mushroomOK
1
Can AnchorWave be used for calculating identities of pairwise alignments in whole genome comparisons?
#65 opened Feb 8, 2024 by cjchen5
1
syncmers?
#64 opened Jan 27, 2024 by cnk113
1
Matching sequences align as 2 indels in paf CIGAR string
#63 opened Jan 18, 2024 by JingaJenga
13
The problem of 'anchorwave proali'
#61 opened Dec 7, 2023 by xuxingyubio
5
Error: could not get output VCF file
#59 opened Nov 21, 2023 by Bank-tidy
3
Error: could not parse the input VCF
#56 opened Sep 19, 2023 by wangzhx36
1
How should I align chromosome regions between distantly evolutionary species?
#48 opened May 12, 2023 by Rafaelsoler13
1
example data core dumped "{EXE}_sse4.1""$@"
#47 opened May 10, 2023 by HozumiLv
6
running proali from custom gff files
#45 opened Apr 19, 2023 by aleksicmil
2
Error in MAFToGVCFPlugin
#42 opened Jan 24, 2023 by ccmenard
1
Lack of understanding of MAF to VCF conversion
#40 opened Jan 4, 2023 by Deng-Yuan
1
What information Anchorwave require to be able to parse the gff file correctly?
#39 opened Oct 7, 2022 by diaspj
4
Identify Duplication
#38 opened Oct 4, 2022 by wyim-pgl
2
Empty CDS file from gff2seq
#36 opened Sep 2, 2022 by nwespe
9
AnchorWave on a very repetitive plant genome
#33 opened Jul 10, 2022 by agolicz
7
How to align the genomes at conting or scaffold level？
#29 opened Jun 6, 2022 by naturalstay
1
there is no match anchor found in the input sam file
#28 opened May 27, 2022 by peterdfields
9
Anchorwave large chromosome error
#26 opened May 9, 2022 by diego-rt
7
proali Error:deNovoGenomeVariantCallingMultipleThreads.cpp:204
#24 opened Feb 28, 2022 by chaimol
4
example data core dumped
#22 opened Feb 10, 2022 by yuanw-18
1
fasta headers not read correctly by gff2seq
#19 opened Jan 10, 2022 by jessepoland
1
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