AnADAMA

Another Automated Data Analysis Management Application

Contents

• Using Version 2
• Overview
• Installation
• Usage

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Using Version 2

To start working with the new features of AnADAMA, use the v2 branch.

$ git clone https://github.com/biobakery/anadama.git
$ cd anadama
$ git checkout v2
$ python setup.py install

Overview

AnADAMA is essentially doit with a few extensions:

• Extra command to serialize the DoIt action plan into a JSON document
• All DoIt tasks are serialized into runnable python scripts.
• Executes tasks on compute clusters LSF and SLURM without having to directly interact with the queueing system.
• Defines pipelines, collections of doit tasks, and provides interfaces to pipelines.

Installation

One liner:

$ pip install -e 'git+https://github.com/biobakery/anadama.git@master#egg=anadama-0.0.1'

Usage

Looking to use AnADAMA for microbiome sequence analysis? Check out the anadama_workflows repository_ over on github.