FUGAsseM v0.3.6

• Added option for hyperparameter tuning RF

FUGAsseM v0.3.5

• Fixed issue when using '--bypass-coexp' option
• Tweaked default options for fugassem_generate_annotation_input utility
• Update demo run
• Tweaked workflow name
• Updated prepare_annotation module

FUGAsseM v0.3.4

• Renamed options for '--go-mode'
• Added 'bypass-coexp' option to skip calculating coexpression
• Fixed issue when using '--bypass-prediction' option
• Added options for calculating feature vector

FUGAsseM v0.3.3

• Reorganize output folders
• Added a finalized combined results file
• Added stratified option for 'Terminal' or 'Strain' level
• Fixed issue when filtering based on prevalence

FUGAsseM v0.3.2

• Added option for prediction using universal GO set
• Added option for prediction using global GO set
• Added option for predicting terms from all GO ontologies
• Refined generate_annotation_input module to prepare co-homology evidence
• Added function for visualization
• Fixed issue on processing fugassem_stratified_abundance module
• Added example data