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fixing typos
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lucacozzuto committed Apr 12, 2018
1 parent 6354805 commit 8a82bfc
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1 change: 1 addition & 0 deletions lib/QC.groovy
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@

static def qualimapRNAseq ( bamfile, annotation_file, outfolder="QUALIMAP", strand="strand-specific-reverse", memory="2G", single="YES", extrapars="", debug="no") {


"""
if [ `echo ${debug} == "debug"` ]; then print="echo "; else print=""; fi
if [ `echo ${single} == "YES"` ]; then pe_mode="-pe"; else pe_mode=""; fi
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