[FIX] misc codespell errors

.eslintignore

@@ -2,4 +2,6 @@
 .vscode/*
 api/*.js
 api/*.js.map
-handler/convert.js
+handler/convert.js
+ui/test/events/*.js
+api/*.ts

.prettierignore

@@ -2,4 +2,6 @@
 node_modules
 ui/node_modules
 ui/src/components/modalityForm.vue
-handler/convert.js
+handler/convert.js
+ui/test/events/*.js
+api/*.ts

api/ezbids.ts

@@ -47,7 +47,7 @@ app.use(bodyParser.json({
 
 app.use('/', require('./controllers'));
 app.use('/api/docs', swaggerUi.serve, swaggerUi.setup(swaggerSpec));
-//error handlin
+//error handling
 //app.use(expressWinston.errorLogger(config.logger.winston)); 
 app.use(function (err, req, res, next) {
     if (typeof err == "string") err = { message: err };

handler/ezBIDS_core/ezBIDS_core.py

@@ -1568,7 +1568,7 @@ def determine_unique_series(dataset_list, bids_compliant):
         Since EchoTime and RepetitionTime are float values, add slight measurement error
         tolerance for these metadata. See https://github.com/rordenlab/dcm2niix/issues/543
 
-        If retro-reconstruction (RR) acquistions are found
+        If retro-reconstruction (RR) acquisitions are found
         ("_RR" in SeriesDescription), they should be of same unique
         series as non retro-reconstruction ones. These are generally rare
         cases, but should be accounted for.
@@ -2988,7 +2988,7 @@ def modify_objects_info(dataset_list):
 
 def extract_series_info(dataset_list_unique_series):
     """
-    Extracts a subset of the acquistion information, which will be displayed on
+    Extracts a subset of the acquisition information, which will be displayed on
     the Series-level page of the ezBIDS UI.
 
     Parameters
@@ -3165,7 +3165,7 @@ def check_dwi_b0maps(dataset_list_unique_series):
 # If BIDS-compliant dataset uploaded, set and apply IntendedFor mapping
 dataset_list_unique_series = set_IntendedFor_B0FieldIdentifier_B0FieldSource(dataset_list_unique_series, bids_compliant)
 
-# Port series level information to all other acquistions (i.e. objects level) with same series info
+# Port series level information to all other acquisitions (i.e. objects level) with same series info
 dataset_list = update_dataset_list(dataset_list, dataset_list_unique_series)
 
 # Apply a few other changes to the objects level

ui/src/libUnsafe.ts

@@ -262,7 +262,7 @@ export function fmapQA($root: IEzbids) {
                     if (fmapMagPhasediffObjs.length == 1) {
                         fmapMagPhasediffObjs.forEach((o: IObject) => {
                             o.analysisResults.warnings.push(
-                                "There doesn't appear to be a full field map pair (magnitude1, phasediff) or triplet (magnitude1, magnitude2, phasediff). It is highly recommended that this acquistion be excluded from BIDS conversion, as it doesn't form a complete pair/triplet."
+                                "There doesn't appear to be a full field map pair (magnitude1, phasediff) or triplet (magnitude1, magnitude2, phasediff). It is highly recommended that this acquisition be excluded from BIDS conversion, as it doesn't form a complete pair/triplet."
                             );
                         });
                     }

ui/test/events/lib.js

@@ -156,7 +156,7 @@ export function fmapQA($root) {
                         let fmapMagFieldmapBadObjs = fmapMagFieldmapObjs.slice(0,-2)
                         fmapMagFieldmapBadObjs.forEach(obj=> {
                             obj.exclude = true
-                            obj.analysisResults.errors = ['Multiple image sets of magnitude & fieldmap field map acquistions found in section. Only selecting most recent pair. Other(s) will not be included in BIDS output']
+                            obj.analysisResults.errors = ['Multiple image sets of magnitude & fieldmap field map acquisitions found in section. Only selecting most recent pair. Other(s) will not be included in BIDS output']
                         });
                     }