Build and Test GATK 4

Try genomicsdb version 1.5.1 snapshot with requested changes #3245

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Triggered via pull request October 12, 2023 17:32

nalinigans

synchronize #8470

ng_genomicsdb_on_azure

Status Success

Total duration 1h 27m 37s

Artifacts 8

This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

6 warnings

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNN_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_M2_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.07 GB
test-results-17.0.6+10-cloud Expired	330 KB
test-results-17.0.6+10-integration Expired	4.32 MB
test-results-17.0.6+10-unit Expired	156 MB
test-results-docker-17.0.6+10-conda Expired	288 KB
test-results-docker-17.0.6+10-integration Expired	4.24 MB
test-results-docker-17.0.6+10-unit Expired	154 MB
test-results-docker-17.0.6+10-variantcalling Expired	12.3 MB