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Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. #3291

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Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment.

Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. #3291

Triggered via pull request October 23, 2023 20:15
@samuelkleesamuelklee
synchronize #8561
sl_python_version_update
Status Failure
Total duration 1h 41m 22s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
3s
check if the environment has privileges
build and push gatk docker to artifacts
39m 55s
build and push gatk docker to artifacts
Validate script WDLs using womtools
1m 10s
Validate script WDLs using womtools
Validate generated WDLs using womtools
14m 45s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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5 errors
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 1.
Java 17.0.6+10 test on docker conda
Process completed with exit code 1.

Artifacts

Produced during runtime
Name Size
gatkDockerImage Expired
2.28 GB
test-results-17.0.6+10-cloud Expired
295 KB
test-results-17.0.6+10-integration Expired
3.57 MB
test-results-17.0.6+10-unit Expired
156 MB
test-results-docker-17.0.6+10-conda Expired
1.03 MB
test-results-docker-17.0.6+10-integration Expired
3.48 MB
test-results-docker-17.0.6+10-unit Expired
154 MB
test-results-docker-17.0.6+10-variantcalling Expired
234 KB