AOU deliverables doc updates [VS-1073] #8551
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mcovarr
commented
Oct 13, 2023
Co-authored-by: Bec Asch <rsasch@users.noreply.github.com>
mcovarr
commented
Oct 17, 2023
| - Run the steps in the notebook: | ||
| - In section 1.2, Set the `sample_list_file_path` variable in that notebook to the path of the file | ||
| - Run the cells up to and through, section 1.4 ("Perform the copy, in batches") | ||
| - If you want to automatically break up the new samples into smaller sample sets, then run the "now that the data have been copied, you can make sample sets if you wish" step. Set the `SUBSET_SIZE` and `set_name` variables to customize. |
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Isn't this something we need to do and not really an "If"? Are there particular values that are known to work well for those variables?
Co-authored-by: Miguel Covarrubias <mcovarr@users.noreply.github.com>
Co-authored-by: Miguel Covarrubias <mcovarr@users.noreply.github.com>
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Includes changes for
I did not make changes for the “Fetch WGS metadata” notebook as George is actively working through that in VS-1089. We can either fold those changes into this PR or have a follow-on PR as appropriate.