no longer duplicate rows in metadata

caporaso-lab · Nov 1, 2024 · cd19ddc · cd19ddc
1 parent 50e9457
commit cd19ddc
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/gut_to_soil_manuscript_figures/notebooks/culturing-plots.ipynb b/gut_to_soil_manuscript_figures/notebooks/culturing-plots.ipynb
@@ -26,7 +26,7 @@
     "\n",
     "# NOTE: change me\n",
     "md_fp = ''\n",
-    "md = pd.read_csv(md_fp, sep='\\t', dtype={'sample-id': str}, skiprows=[1])\n",
+    "md = pd.read_csv(md_fp, sep='\\t', dtype={'sample-id': str})\n",
     "\n",
     "md = md.rename({'sample-id': 'sample_id'}, axis=1)\n",
     "\n",
@@ -791,7 +791,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.14"
+   "version": "3.12.5"
   }
  },
  "nbformat": 4,

diff --git a/gut_to_soil_manuscript_figures/notebooks/qcpr-plots.ipynb b/gut_to_soil_manuscript_figures/notebooks/qcpr-plots.ipynb
@@ -24,7 +24,7 @@
     "\n",
     "# NOTE: change me\n",
     "md_fp = ''\n",
-    "md = pd.read_csv(md_fp, sep='\\t', dtype={'sample-id': str}, skiprows=[1])\n",
+    "md = pd.read_csv(md_fp, sep='\\t', dtype={'sample-id': str})\n",
     "\n",
     "md = md.rename({'sample-id': 'sample_id'}, axis=1)\n",
     "\n",
@@ -622,7 +622,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.14"
+   "version": "3.12.5"
   }
  },
  "nbformat": 4,