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Tumors detections on MRI slice using semantic segmentation.

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curie-data-factory/cassandre

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Cassandre Project

Made by : Matthieu Bachelot

What is Project Cassandre ?

  • Master thesis project
  • Use deep learning methods on MRI volumes
  • Detect tumors on MRI slice using semantic segmentation

Methodology

  • Test several architectures
  • Test several data modeling / data generation methods
  • Select the best

Architectures

  • Auto Encoder / PSPnet / UNet / SegNet
  • Kepp their architectures intact
  • Test metric / loss / optimizers

Data generation techniques

Ressources constraints

img/resources_constraints.PNG

Data modeling methods

Ground Truth representation

img/ground_truth_representation.PNG

Final results

Focus on two networks -> reduce test time

img/reduce_test_time.PNG

img/dice.PNG

img/dice_custom.PNG

  • Statistical study on test data
  • PSPNet was the best overall
  • Training using Mini batch generation / One hot Vector representation / Data Augmentation

img/final_loss_acuracy.PNG

img/dice_similatiry.PNG

img/box_plot.PNG

Limits

  • Lot of result variation between patients
  • Heterogeneous dataset
  • time limits