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28 followers · 22 following
  • Imperial College London
  • London, UK

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Achievement: Pull Shark

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@IPTC-DataAnalysisCourse

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cwieder/README.md

Bioinformatician interested in making the complex simple...

📌 Some resources I've developed:

  • Python toolkit for Single-Sample Pathway Analysis: py-ssPA
  • Pathway-Driven Multi-Omics integration: PathIntegrate
  • Pathway analysis tutorials: IPTC, ssPA

Contributions, collaborations, and issues welcome! 📨

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  1. PathIntegrate PathIntegrate Public

    PathIntegrate Python package for pathway-based multi-omics data integration

    Jupyter Notebook 11 1

  2. py-ssPA py-ssPA Public

    Single sample pathway analysis tools for omics data

    Jupyter Notebook 12 5

  3. SymbNET_tutorial SymbNET_tutorial Public

    Pathway analysis tutorial for SymbNET 23

    Jupyter Notebook 2

  4. metabolomics-ORA metabolomics-ORA Public

    Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, et al. …

    Jupyter Notebook 9 3