Get integration sites from Database

For a given sample name gets integration site and matched random controls(MRCs).

Interface

Functions:

• getUniqueSites
• getMRCs
• setNameExists
• getReferenceGenome

Generation of random positions on genome

• get_reference_genome finds genome object for UCSC name
• get_random_positions generate gender-specific positions for a genome
• get_N_MRCs generate MRCs for sites that are not in DB

Testing of the library components

Run in the R console:

library(testthat)
test_dir(".")