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Fixed keggcharter_input.tsv
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iquasere committed Sep 20, 2023
1 parent 0b73819 commit b4b9062
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Showing 2 changed files with 1,002 additions and 1,002 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -42,4 +42,4 @@ jobs:
docker load --input /tmp/keggcharter.tar
docker image ls -a
- name: Run KEGGCharter
run: docker run keggcharter /bin/bash -c "keggcharter -f KEGGCharter/cicd/keggcharter_input.tsv -rd resources_directory -mm 00190,00680 -keggc 'Cross-reference (KEGG)' -qcol mt_0.01a,mt_1a,mt_100a,mt_0.01b,mt_1b,mt_100b,mt_0.01c,mt_1c,mt_100c -tc 'Taxonomic lineage (SPECIES)' -mm 00680"
run: docker run keggcharter /bin/bash -c "keggcharter -f KEGGCharter/cicd/keggcharter_input.tsv -rd resources_directory -mm 00190,00680 -keggc 'KEGG ID' -qcol mt_0.01a,mt_1a,mt_100a,mt_0.01b,mt_1b,mt_100b,mt_0.01c,mt_1c,mt_100c -tc 'Species' -mm 00680"
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