Add recently added samtools/bcftools commands

jmarshall · Feb 28, 2022 · ff4f717 · ff4f717
1 parent fab45b2
commit ff4f717
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diff --git a/pysam/bcftools.py b/pysam/bcftools.py
@@ -13,6 +13,7 @@
     "reheader",
     "sort",
     "view",
+    "head",
     "call",
     "consensus",
     "cnv",

diff --git a/pysam/samtools.py b/pysam/samtools.py
@@ -4,8 +4,10 @@
 SAMTOOLS_DISPATCH = {
     # samtools 'documented' commands
     "view": ("view", None),
+    "head": ("head", None),
     "sort": ("sort", None),
     "mpileup": ("mpileup", None),
+    "consensus": ("consensus", None),
     "depth": ("depth", None),
     "faidx": ("faidx", None),
     "fqidx": ("fqidx", None),
-Original file line number
+Diff line change
@@ Expand Up / @@ -13,6 +13,7 @@ @@
         "reheader",
         "sort",
         "view",
+        "head",
         "call",
         "consensus",
         "cnv",
@@ Expand Down @@