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fixed various typo
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simongravelle committed Jun 21, 2024
1 parent 1a99c31 commit fdf5842
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Showing 7 changed files with 69 additions and 80 deletions.
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Expand Up @@ -289,7 +289,7 @@ The LAMMPS input
.. container:: justify

The file *parm.lammps* is included in the
simulation by adding the following line to the *input.lammps* file:
simulation by adding the following line into the *input.lammps* file:

.. code-block:: lammps
Expand Down Expand Up @@ -340,7 +340,7 @@ Prepare the initial state

.. container:: justify

Let us also change the box boundaries by adding the following line to *input.lammps*:
Let us also change the box boundaries by adding the following line into *input.lammps*:

.. code-block:: lammps
Expand All @@ -358,7 +358,7 @@ Prepare the initial state
A displacement will be imposed on the edges of the CNT. To do so, let us isolate the
atoms from the two edges and place them into groups named *rtop*
and *rbot*, respectively.
Add the following lines to *input.lammps*:
Add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -465,7 +465,7 @@ The molecular dynamics
.. container:: justify

Let us specify the thermalization and the dynamics of the
system. Add the following lines to *input.lammps*:
system. Add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -792,7 +792,7 @@ Use of AIREBO potential
.. container:: justify

Then, let us import the LAMMPS data file, and set the
pair coefficients by adding the following lines to *input.lammps*
pair coefficients by adding the following lines into *input.lammps*

.. code-block:: lammps
Expand Down Expand Up @@ -875,7 +875,7 @@ Start the simulation

First, as an equilibration step, let us set the velocity to 0
for the atoms of both edges. Let us fully constrain the edges.
Add the following lines to LAMMPS:
Add the following lines into LAMMPS:

.. code-block:: lammps
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6 changes: 3 additions & 3 deletions docs/sphinx/source/tutorials/level1/lennard-jones-fluid.rst
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Expand Up @@ -327,7 +327,7 @@ Simulation Settings
- :math:`\sigma_{12} = \sqrt{1.0 \times 3.0} = 1.732`.

When necessary, cross-parameters can be explicitly specified
by adding the following line to the input file: *pair_coeff 1 2 0.707 1.732*.
by adding the following line into the input file: *pair_coeff 1 2 0.707 1.732*.
This can be used for instance to increase the attraction between particles
of type 1 and 2, without affecting the interactions between particles of the same type.

Expand Down Expand Up @@ -378,7 +378,7 @@ Energy minimization
.. container:: justify

The system is now fully parametrized. Let us fill the two last remaining sections
by adding the following lines to *input.lammps*:
by adding the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -902,7 +902,7 @@ Restarting from a saved configuration
.. container:: justify

Add the following lines to *input.md.lammps*.
Add the following lines into *input.md.lammps*.
Note the absence of *Simulation settings* section,
because the settings are taken from the *.data* file.

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16 changes: 8 additions & 8 deletions docs/sphinx/source/tutorials/level2/nanosheared-electrolyte.rst
Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,7 @@ System generation

.. container:: justify

Let us create the box by adding the following lines to *input.lammps*:
Let us create the box by adding the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -150,7 +150,7 @@ System generation
sub-regions corresponding respectively to the two solid
walls, and create a larger region from the union of the two
regions. Then, let us create atoms of type 5 (the wall) within the two
regions. Add the following lines to *input.lammps*:
regions. Add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -178,7 +178,7 @@ System generation

.. container:: justify

Add the following lines to *input.lammps*:
Add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -347,7 +347,7 @@ System generation
.. container:: justify

To avoid high density and pressure,
let us add the following lines to *input.lammps*
let us add the following lines into *input.lammps*
to delete a few of the water molecules:

.. code-block:: lammps
Expand All @@ -356,7 +356,7 @@ System generation
.. container:: justify

Finally, add the following lines to *input.lammps*:
Finally, add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -505,7 +505,7 @@ Energy minimization
.. container:: justify

Let us also print the atom positions in a *.lammpstrj* file by
adding the following line to *input.lammps*:
adding the following line into *input.lammps*:

.. code-block:: lammps
Expand Down Expand Up @@ -622,7 +622,7 @@ System equilibration

.. container:: justify

Then, add the following lines to *input.lammps* for
Then, add the following lines into *input.lammps* for
the trajectory visualization and output:

.. code-block:: lammps
Expand Down Expand Up @@ -772,7 +772,7 @@ Imposed shearing
Finally, let us dump the atom positions, extract the
velocity profiles using several *ave/chunk* commands, extract the
force applied on the walls, and then run for :math:`200\,\text{ps}`
Add the following lines to *input.lammps*:
Add the following lines into *input.lammps*:

.. code-block:: lammps
Expand Down
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