Code and data for the Chlamydomonas reinhardtii proteome evolution experiment

The project results are published at

File	Description
mqpar_v16.xml	MaxQuant configuration file (XML)
parameters.txt	MaxQuant configuration file (plain text)
proteinGroupsGoodColNames.csv	Proteomic data: output from MaxQuant
proteinGroups.txt	Proteomic data: output from MaxQuant including organelle hits
id_conversion_raw.txt	Conversion table for different database IDs
KEGG_Cp/annotation_table.csv	KEGG annotation table
KEGG_Chr/annotation_table_chr.csv	KEGG annotation table including organelle-encoded proteins
panther_annotations.csv	Panther annotation table
selected_clusters.csv	David annotation table
david_opposites.xlsx	David annotation table for the highly divergent proteins
circos/karyotype.txt	Circos configuration files
circos/circos.conf
circos/colors_fonts_patterns.conf
circos/housekeeping.conf
circos/ideogram.conf
circos/image.conf
circos/ticks.conf
ChlamEE_phenotypic_measurements.xlsx	Stoichiometry and respiration data

Name		Name	Last commit message	Last commit date
Latest commit History 56 Commits
KEGG_Chr		KEGG_Chr
KEGG_Cp		KEGG_Cp
circos		circos
ChlamEE_phenotypic_measurements.xlsx		ChlamEE_phenotypic_measurements.xlsx
README.md		README.md
david_opposites.xlsx		david_opposites.xlsx
id_conversion_raw.txt		id_conversion_raw.txt
mqpar_v16.xml		mqpar_v16.xml
panther_annotations.txt		panther_annotations.txt
parameters.txt		parameters.txt
proteinGroups.txt		proteinGroups.txt
proteinGroupsGoodColNames.csv		proteinGroupsGoodColNames.csv
selected_clusters.csv		selected_clusters.csv
workflow.org		workflow.org