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SimpleITK: DICOM JPEG, NRRD, NIFTI (Windows only) (#95)
* SimpleITK-based DICOM importer. * Cleanup: Importer interfaces and factory. * NRRD and NIFTI import (using SimpleITK) * Added script for exporting .unitypackage * Updated documentation. * Don't use EditorDatasetImporter for RAW import. * .gitattributes
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| DO NOT REMOVE. This file simply exists so we can get the path of the UnityVolumeRendering project folder (maybe be added as a subfolder to another project). | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,158 @@ | ||
| using System; | ||
| using System.Collections.Generic; | ||
| using System.IO; | ||
| using System.Linq; | ||
| using System.Net; | ||
| using UnityEditor; | ||
| using UnityEngine; | ||
| using System.IO.Compression; | ||
|
|
||
| namespace UnityVolumeRendering | ||
| { | ||
| /// <summary> | ||
| /// Manager for the SimpleITK integration. | ||
| /// Since SimpleITK is a native library that requires binaries to be built for your target platform, | ||
| /// SimpleITK will be disabled by default and can be enabled through this class. | ||
| /// The binaries will be downloaded automatically. | ||
| /// </summary> | ||
| public class SimpleITKManager | ||
| { | ||
| private static string SimpleITKDefinition = "UVR_USE_SIMPLEITK"; | ||
|
|
||
| public static bool IsSITKEnabled() | ||
| { | ||
| BuildTarget target = EditorUserBuildSettings.activeBuildTarget; | ||
| BuildTargetGroup group = BuildPipeline.GetBuildTargetGroup(target); | ||
|
|
||
| HashSet<string> defines = new HashSet<string>(PlayerSettings.GetScriptingDefineSymbolsForGroup(group).Split(';')); | ||
| return defines.Contains(SimpleITKDefinition); | ||
| } | ||
|
|
||
| public static void EnableSITK(bool enable) | ||
| { | ||
| if (!HasDownloadedBinaries()) | ||
| { | ||
| EditorUtility.DisplayDialog("Missing SimpleITK binaries", "You need to download the SimpleITK binaries before you can enable SimpleITK.", "Ok"); | ||
| return; | ||
| } | ||
|
|
||
| // Enable the UVR_USE_SIMPLEITK preprocessor definition for standalone target | ||
| List<BuildTargetGroup> buildTargetGroups = new List<BuildTargetGroup> (){ BuildTargetGroup.Standalone }; | ||
| foreach (BuildTargetGroup group in buildTargetGroups) | ||
| { | ||
| List<string> defines = PlayerSettings.GetScriptingDefineSymbolsForGroup(group).Split(';').ToList(); | ||
| defines.Remove(SimpleITKDefinition); | ||
| if (enable) | ||
| defines.Add(SimpleITKDefinition); | ||
| PlayerSettings.SetScriptingDefineSymbolsForGroup(group, String.Join(";", defines)); | ||
| } | ||
|
|
||
| // Save project and recompile scripts | ||
| AssetDatabase.SaveAssets(); | ||
| AssetDatabase.Refresh(); | ||
| #if UNITY_2019_3_OR_NEWER | ||
| UnityEditor.Compilation.CompilationPipeline.RequestScriptCompilation(); | ||
| #endif | ||
| } | ||
|
|
||
| public static bool HasDownloadedBinaries() | ||
| { | ||
| string binDir = GetBinaryDirectoryPath(); | ||
| return Directory.Exists(binDir) && Directory.GetFiles(binDir).Length > 0; // TODO: Check actual files? | ||
| } | ||
|
|
||
| public static void DownloadBinaries() | ||
| { | ||
| string extractDirPath = GetBinaryDirectoryPath(); | ||
| string zipPath = Path.Combine(Directory.GetParent(extractDirPath).FullName, "SimpleITK.zip"); | ||
| if (HasDownloadedBinaries()) | ||
| { | ||
| if (!EditorUtility.DisplayDialog("Download SimpleITK binaries", "SimpleITK has already been downloaded. Do you want to delete it and download again?", "Yes", "No")) | ||
| { | ||
| return; | ||
| } | ||
| } | ||
|
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| EditorUtility.DisplayProgressBar("Downloading SimpleITK", "Downloading SimpleITK binaries.", 0); | ||
|
|
||
| // Downlaod binaries zip | ||
| using (var client = new WebClient()) | ||
| { | ||
| string downloadURL = "https://sourceforge.net/projects/simpleitk/files/SimpleITK/1.2.4/CSharp/SimpleITK-1.2.4-CSharp-win64-x64.zip/download"; | ||
| client.DownloadFile(downloadURL, zipPath); | ||
|
|
||
| EditorUtility.DisplayProgressBar("Downloading SimpleITK", "Downloading SimpleITK binaries.", 70); | ||
|
|
||
| if (!File.Exists(zipPath)) | ||
| { | ||
| Debug.Log(zipPath); | ||
| EditorUtility.DisplayDialog("Error downloadig SimpleITK binaries.", "Failed to download SimpleITK binaries. Please check your internet connection.", "Close"); | ||
| Debug.Log($"Failed to download SimpleITK binaries. You can also try to manually download from {downloadURL} and extract it to some folder inside the Assets folder."); | ||
| return; | ||
| } | ||
|
|
||
| try | ||
| { | ||
| ExtractZip(zipPath, extractDirPath); | ||
| } | ||
| catch (Exception ex) | ||
| { | ||
| string errorString = $"Extracting binaries failed with error: {ex.Message}\n" | ||
| + $"Please try downloading the zip from: {downloadURL}\nAnd extract it somewhere in the Assets folder.\n\n" | ||
| + "The download URL can be copied from the error log (console)."; | ||
| Debug.LogError(ex.ToString()); | ||
| Debug.LogError(errorString); | ||
| EditorUtility.DisplayDialog("Failed to extract binaries.", errorString, "Close"); | ||
| } | ||
| } | ||
|
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| File.Delete(zipPath); | ||
|
|
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| EditorUtility.ClearProgressBar(); | ||
| } | ||
|
|
||
| private static void ExtractZip(string zipPath, string extractDirPath) | ||
| { | ||
| // Extract zip | ||
| using (FileStream zipStream = new FileStream(zipPath, FileMode.Open)) | ||
| { | ||
| using (ZipArchive archive = new ZipArchive(zipStream, ZipArchiveMode.Update)) | ||
| { | ||
| if (!Directory.Exists(extractDirPath)) | ||
| Directory.CreateDirectory(extractDirPath); | ||
|
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||
| foreach (ZipArchiveEntry entry in archive.Entries) | ||
| { | ||
| if (entry.Name != "" && !entry.Name.EndsWith("/")) | ||
| { | ||
| string destFilePath = Path.Combine(extractDirPath, entry.Name); | ||
| //TextAsset destAsset = new TextAsset("abc"); | ||
| //AssetDatabase.CreateAsset(destAsset, extractDirRelPath + "/" + entry.Name); | ||
| Stream inStream = entry.Open(); | ||
|
|
||
| using (Stream outStream = File.OpenWrite(destFilePath)) | ||
| { | ||
| inStream.CopyTo(outStream); | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } | ||
|
|
||
| private static string GetBinaryDirectoryPath() | ||
| { | ||
| string dataPath = Application.dataPath; | ||
| foreach (string file in Directory.EnumerateFiles(Application.dataPath, "*.*", SearchOption.AllDirectories)) | ||
| { | ||
| // Search for magic file stored in Assets directory. | ||
| // This is necessary for cases where the UVR plugin is stored in a subfolder (thatæs the case for the asset store version) | ||
| if (Path.GetFileName(file) == "DONOTREMOVE-PathSearchFile.txt") | ||
| { | ||
| dataPath = Path.GetDirectoryName(file); | ||
| } | ||
| } | ||
| return Path.Combine(dataPath, "3rdparty", "SimpleITK"); // TODO: What is UVR is in a subfolder? | ||
| } | ||
| } | ||
| } |
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