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Auto-KB: Adding more automation functions #41

Merged
merged 2 commits into from
Jun 19, 2024
Merged

Auto-KB: Adding more automation functions #41

merged 2 commits into from
Jun 19, 2024

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cmungall
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This PR adds

  • update
  • review
  • apply-patch

commands and operations

update allows individual fields to be updated; for example, if
only some of your records have description, this will populate others
(using RAG)

the review command will ask the LLM to be a critic, and evaluate
individual assertions using its own latent KB, guided by the curator.

A new output format is supported, "patch" which makes it easier
to use these commands as part of a curation cycle

It also enhances the citeseek function to allow for weaving in multiple pieces
of evidence (dynamically retrieved from pubmed) to complex objects.

Also adds two wrappers

  • fairsharing
  • jgi data portal

cmungall added 2 commits June 17, 2024 15:48
This PR adds

- update
- review
- apply-patch

commands and operations

update allows individual fields to be updated; for example, if
only some of your records have `description`, this will populate others
(using RAG)

the review command will ask the LLM to be a critic, and evaluate
individual assertions using its own latent KB, guided by the curator.

A new output format is supported, "patch" which makes it easier
to use these commands as part of a curation cycle

It also enhances the citeseek function to allow for weaving in multiple pieces
of evidence (dynamically retrieved from pubmed) to complex objects.

Also adds two wrappers

- fairsharing
- jgi data portal
@cmungall cmungall merged commit 07b7a70 into main Jun 19, 2024
0 of 3 checks passed
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