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@ncbi-nlp

NLM/NCBI BioNLP Research Group (PI: Zhiyong Lu)

These tools are the results of research conducted in the Computational Biology Branch, NLM/NCBI. More information about NLM/NCBI's disclaimer policy is availabl

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  1. BioSentVec BioSentVec Public

    BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

    Jupyter Notebook 582 100

  2. bluebert bluebert Public

    BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

    Python 561 79

  3. BLUE_Benchmark BLUE_Benchmark Public

    BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

    Python 287 41

  4. NegBio NegBio Public

    📰 High-performance tool for negation and uncertainty detection in radiology reports

    Python 158 42

  5. BioWordVec BioWordVec Public

    Python 145 29

  6. TrialGPT TrialGPT Public

    Code and data for TrialGPT.

    Python 60 26

Repositories

Showing 10 of 34 repositories
  • MedCalc-Bench Public

    [NeurIPS 2024 Datasets and Benchmark Track Oral] MedCalc-Bench: Evaluating Large Language Models for Medical Calculations

    ncbi-nlp/MedCalc-Bench’s past year of commit activity
    Python 35 5 0 0 Updated Dec 6, 2024
  • TrialGPT Public

    Code and data for TrialGPT.

    ncbi-nlp/TrialGPT’s past year of commit activity
    Python 60 26 2 0 Updated Nov 24, 2024
  • ncbi-nlp/LLM-Medicine-Primer’s past year of commit activity
    2 0 0 0 Updated Oct 24, 2024
  • Calculator-Recommendation Public

    MedCalcQA is a benchmarking dataset designed to assess the capability of LLMs to recommend clinical calculators

    ncbi-nlp/Calculator-Recommendation’s past year of commit activity
    Python 0 0 0 0 Updated Oct 22, 2024
  • ncbi-nlp/deepseenet-plus’s past year of commit activity
    Python 0 0 0 0 Updated Oct 14, 2024
  • ncbi-nlp/Clinical-Tool-Learning’s past year of commit activity
    Python 2 0 0 0 Updated Oct 9, 2024
  • EnzChemRED Public
    ncbi-nlp/EnzChemRED’s past year of commit activity
    0 0 0 0 Updated Sep 17, 2024
  • ncbi-nlp/Unmasking-GPT-Bias’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Sep 4, 2024
  • Deep-RPD-Net Public
    ncbi-nlp/Deep-RPD-Net’s past year of commit activity
    Python 0 0 0 0 Updated Aug 30, 2024
  • PhenoTagger Public

    PhenoTagger

    ncbi-nlp/PhenoTagger’s past year of commit activity
    GAP 54 MIT 16 0 0 Updated Jan 24, 2024

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