567 make studies swappable (#608)

* fix: out of sync snackbar, error importing studies message, search url, curation import review styling, better move to extraction handling, handsontable responsiveness for study view * feat: add support for bulk upload and switching studies * feat: add test hot annotation * feat: added annotation store * feat: minor refactors * feat: more updates * chore: add typescript sdk * chore: add sdk updates * feat: creating new annotation study table with store * feat: added annotation study table * feat: performance improvements * feat: finished refactor of annotation table making it robust to rerenders * feat: finished implementing clone on save * feat: fixed bug with cloning and annotations, added swap button * feat: added swap study button feature * feat: added rounded bottom corners * fix: resolved some visual and logical bugs, fixed test case * chore: remove unused variable
neurostuff · Nov 2, 2023 · cd943a0 · cd943a0
1 parent e424b75
commit cd943a0
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diff --git a/compose/neurosynth-frontend/cypress/e2e/pages/EditStudyPage.cy.tsx b/compose/neurosynth-frontend/cypress/e2e/pages/EditStudyPage.cy.tsx
@@ -2,21 +2,31 @@
 
 export {};
 
-const PATH = '/projects/abc123/extraction/studies/mock-study-id/edit';
+const PATH = '/projects/abc123/extraction/studies/mock-study-id';
 const PAGE_NAME = 'EditStudyPage';
 
 describe(PAGE_NAME, () => {
     beforeEach(() => {
         cy.clearLocalStorage().clearSessionStorage();
         cy.intercept('GET', 'https://api.appzi.io/**', { fixture: 'appzi' }).as('appziFixture');
+        cy.intercept('GET', `https://api.semanticscholar.org/**`, {
+            fixture: 'semanticScholar',
+        }).as('semanticScholarFixture');
     });
 
     it('should load', () => {
-        cy.intercept('GET', `**/api/projects/*`, { fixture: 'project' }).as('projectFixture');
         cy.intercept('GET', `**/api/studies/mock-study-id*`, { fixture: 'study' }).as(
             'studyFixture'
         );
-        cy.visit(PATH).wait('@projectFixture').wait('@studyFixture');
+        cy.intercept('GET', `**/api/projects/*`, { fixture: 'project' }).as('projectFixture');
+        cy.intercept('GET', `**/api/annotations/*`, { fixture: 'annotation' }).as(
+            'annotationFixture'
+        );
+        cy.visit(PATH)
+            .wait('@studyFixture')
+            .wait('@projectFixture')
+            .wait('@annotationFixture')
+            .wait('@semanticScholarFixture');
         // cy.login('mocked').wait('@realProjectsRequest').visit(PATH).wait('@studyFixture');
     });
 

diff --git a/compose/neurosynth-frontend/cypress/fixtures/annotation.json b/compose/neurosynth-frontend/cypress/fixtures/annotation.json
@@ -0,0 +1,44 @@
+{
+    "created_at": "2023-11-02T19:05:58.374860+00:00",
+    "description": "",
+    "id": "5LSBDTGqA6RF",
+    "metadata": null,
+    "name": "Annotation for studyset 73HRs8HaJbR8",
+    "note_keys": {
+      "included": "boolean"
+    },
+    "notes": [
+      {
+        "analysis": "5KyvcoE3eE8f",
+        "analysis_name": "Analysis 1",
+        "authors": "Noonan SK, Haist F, Muller RA",
+        "note": {
+          "included": false
+        },
+        "publication": "Brain research",
+        "study": "mock-study-id",
+        "study_name": "Aberrant functional connectivity in autism: evidence from low-frequency BOLD signal fluctuations.",
+        "study_year": 2009
+      },
+      {
+        "analysis": "B7GDVjuVThso",
+        "analysis_name": "Analysis 2",
+        "authors": "Noonan SK, Haist F, Muller RA",
+        "note": {
+          "included": true
+        },
+        "publication": "Brain research",
+        "study": "mock-study-id",
+        "study_name": "Aberrant functional connectivity in autism: evidence from low-frequency BOLD signal fluctuations.",
+        "study_year": 2009
+      }
+    ],
+    "source": null,
+    "source_id": null,
+    "source_updated_at": null,
+    "studyset": "73HRs8HaJbR8",
+    "updated_at": null,
+    "user": "github|26612023",
+    "username": "Nicholas Lee"
+  }
+
diff --git a/compose/neurosynth-frontend/cypress/fixtures/project.json b/compose/neurosynth-frontend/cypress/fixtures/project.json
@@ -1,47 +1,120 @@
 {
-    "created_at": "2023-09-14T18:04:28.079423+00:00",
-    "description": "",
-    "id": "4HxF4g4WC5zj",
-    "meta_analyses": [],
-    "name": "My project name",
-    "neurostore_study": {
-      "created_at": "2023-09-14T18:04:28.090521+00:00",
-      "exception": null,
-      "neurostore_id": "4PG9x8gYaoWd",
-      "status": "PENDING",
-      "traceback": null,
-      "updated_at": "2023-09-14T18:04:28.111166+00:00"
-    },
-    "neurostore_url": "https://neurostore.org/api/studies/4PG9x8gYaoWd",
-    "provenance": {
-      "curationMetadata": {
-        "columns": [],
-        "exclusionTags": [],
-        "identificationSources": [],
-        "infoTags": [],
-        "prismaConfig": {
-          "eligibility": {
-            "exclusionTags": []
-          },
-          "identification": {
-            "exclusionTags": []
-          },
-          "isPrisma": false,
-          "screening": {
-            "exclusionTags": []
-          }
+  "created_at": "2023-11-02T15:48:04.630172+00:00",
+  "description": "this is a bulk import test",
+  "id": "3YK4ZD7aeyQU",
+  "meta_analyses": [
+    "3xHJJQWFURob"
+  ],
+  "name": "Bulk import test",
+  "neurostore_study": {
+    "created_at": "2023-11-02T15:48:04.640598+00:00",
+    "exception": null,
+    "neurostore_id": "7BrAuwJ2tjPW",
+    "status": "PENDING",
+    "traceback": null,
+    "updated_at": "2023-11-02T15:48:04.653465+00:00"
+  },
+  "neurostore_url": "https://neurostore.org/api/studies/7BrAuwJ2tjPW",
+  "provenance": {
+    "curationMetadata": {
+      "columns": [
+        {
+          "id": "370ba40c-91e8-47e7-9b4d-926bc8f31d10",
+          "name": "not included",
+          "stubStudies": []
+        },
+        {
+          "id": "1f15d9a7-968e-44a6-8574-caa3794e050e",
+          "name": "included",
+          "stubStudies": []
+        }
+      ],
+      "exclusionTags": [
+        {
+          "id": "neurosynth_exclude_exclusion",
+          "isAssignable": true,
+          "isExclusionTag": true,
+          "label": "Exclude"
+        },
+        {
+          "id": "neurosynth_duplicate_exclusion",
+          "isAssignable": true,
+          "isExclusionTag": true,
+          "label": "Duplicate"
+        }
+      ],
+      "identificationSources": [
+        {
+          "id": "neurosynth_neurostore_id_source",
+          "label": "Neurostore"
+        },
+        {
+          "id": "neurosynth_pubmed_id_source",
+          "label": "PubMed"
+        },
+        {
+          "id": "neurosynth_scopus_id_source",
+          "label": "Scopus"
+        },
+        {
+          "id": "neurosynth_web_of_science_id_source",
+          "label": "Web of Science"
+        },
+        {
+          "id": "neurosynth_psycinfo_id_source",
+          "label": "PsycInfo"
+        }
+      ],
+      "infoTags": [
+        {
+          "id": "neurosynth_untagged_tag",
+          "isAssignable": false,
+          "isExclusionTag": false,
+          "label": "Untagged studies"
+        },
+        {
+          "id": "neurosynth_uncategorized_tag",
+          "isAssignable": false,
+          "isExclusionTag": false,
+          "label": "Uncategorized Studies"
+        },
+        {
+          "id": "neurosynth_needs_review_tag",
+          "isAssignable": false,
+          "isExclusionTag": false,
+          "label": "Needs Review"
+        },
+        {
+          "id": "6f299c47-766c-48bd-a56b-9c77019ea9de",
+          "isAssignable": true,
+          "isExclusionTag": false,
+          "label": "marijuana"
+        }
+      ],
+      "prismaConfig": {
+        "eligibility": {
+          "exclusionTags": []
+        },
+        "identification": {
+          "exclusionTags": []
+        },
+        "isPrisma": false,
+        "screening": {
+          "exclusionTags": []
         }
-      },
-      "extractionMetadata": {
-        "studyStatusList": []
-      },
-      "metaAnalysisMetadata": {
-        "canEditMetaAnalyses": false
       }
     },
-    "public": false,
-    "updated_at": "2023-09-14T18:04:34.184976+00:00",
-    "user": "github|12387943",
-    "username": "Nicholas Lee"
-  }
-
+    "extractionMetadata": {
+      "annotationId": "5LSBDTGqA6RF",
+      "studyStatusList": [],
+      "studysetId": "73HRs8HaJbR8"
+    },
+    "metaAnalysisMetadata": {
+      "canEditMetaAnalyses": true
+    }
+  },
+  "public": false,
+  "updated_at": "2023-11-02T19:42:04.265234+00:00",
+  "user": "github|26612023",
+  "username": "Nicholas Lee"
+}