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1. tools tools Public

   Python package with helper tools for the nf-core community.

   Python 245 192

2. modules modules Public

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow 287 735

3. rnaseq rnaseq Public

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow 947 713

4. sarek sarek Public

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   Nextflow 414 419

5. chipseq chipseq Public

   ChIP-seq peak-calling, QC and differential analysis pipeline.

   Nextflow 201 150

6. eager eager Public

   A fully reproducible and state-of-the-art ancient DNA analysis pipeline

   Nextflow 154 82