new module: Baysor

[heylf]

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[heylf]

Repo
https://github.com/kharchenkolab/Baysor

Description of feature
https://www.10xgenomics.com/analysis-guides/using-baysor-to-perform-xenium-cell-segmentation

[sebgoti]

Hi there, since I see that this issue has been open for a while and the repo seems to be empty I thought of working on it.

[khersameesh24]

Hi @sebgoti , I already have worked on baysor as a module. Baysor will be a local module in the spatialxe pipeline and later will be pushed to nf-core modules

[sebgoti]

Hi @khersameesh24 , would you like to collaborate together on the individual module? I do not see at the moment any references of it on spatialxe. I already have a working version prepared :)

[khersameesh24]

Hi @sebgoti , can you connect on slack?

[sebgoti]

Already send a DM via the nf-core workspace