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modules.json
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modules.json
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{
"name": "nf-core/references",
"homePage": "https://github.com/nf-core/references",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/bbsplit": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"bowtie/build": {
"branch": "master",
"git_sha": "3a897454edabb27d21debfec644e40f7bcfa4c43",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"custom/catadditionalfasta": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"dragmap/hashtable": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/dragmap/hashtable/dragmap-hashtable.diff"
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "1999eff2c530b2b185a25cc42117a1686f09b685",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "97321eded31a12598837a476d3615300af413bb7",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"hisat2/build": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/hisat2/build/hisat2-build.diff"
},
"hisat2/extractsplicesites": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"kallisto/index": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"],
"patch": "modules/nf-core/kallisto/index/kallisto-index.diff"
},
"msisensorpro/scan": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"rsem/preparereference": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/rsem/preparereference/rsem-preparereference.diff"
},
"salmon/index": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"],
"patch": "modules/nf-core/salmon/index/salmon-index.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/faidx/samtools-faidx.diff"
},
"sortmerna": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"star/genomegenerate": {
"branch": "master",
"git_sha": "a5ad53288c79fa52c5ae708c317e09ec2dd149ab",
"installed_by": ["modules"],
"patch": "modules/nf-core/star/genomegenerate/star-genomegenerate.diff"
},
"tabix/tabix": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "56372688d8979092cafbe0c5c3895b491166ca1c",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}