Code

Hierarchy browser#53

Code

Merged

will-moore merged 90 commits intoome:mainome/ome2024-ngff-challenge:mainfrom will-moore:hierarchy_browserwill-moore/ome2024-ngff-challenge:hierarchy_browserCopy head branch name to clipboardOct 22, 2024

+3,865-2,562

Commits

Commits on Oct 7, 2024

• Add shape and rocrate columns to samples.csv

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  c59ed04

• Update branch name in samples.csv

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  4cd5994

• Load all rows from csv but don't fetch data from zarrs

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  555bdf2

• rough page layout started

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  9725aa9

• Add colums to idr0157_samples.csv

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  4a12d78

• Remove duplicate rows from webknossos_samples.csv

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Commits on Oct 8, 2024

• Use virtual list. Improve sorting with numbers

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• load_zarr_stats.py loads zarray and rocrate

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• Add idr0054_samples into idr_samples.csv

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  f6748ba

• Add missing ZarrListItem.svelte

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  94fa014

• Fix sorting by numbers

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  b19a21f

• Show Thumbnails for list items

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• Filter by nDims

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• Temp: use temp JAX csv with extra columns

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• Add dimension_names to webknossos.csv

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Commits on Oct 9, 2024

• Add validator and vizarr links, dims in table

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  8ea7d08

• Add missing ome and vizarr logos

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• Merge remote-tracking branch 'origin/main' into hierarchy_browser

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• Add columns to uni_muenster_samples.csv

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• Point to uni_muenster_samples.csv from this branch

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• Merge remote-tracking branch 'origin/main' into hierarchy_browser

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  d35a74c

• Basic working filter by source

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  cda671b

• Fix ome and vizarr logos

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• Show thumbnails for sources

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  21ef679

• Use Thumbloader to try fix source thumbs

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  e35e91e

• Don't show Thumbnail for each source

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  f872677

• Remove Sort-by url and source

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  b995aee

Commits on Oct 10, 2024

• Move University of Muenster under n4bi.csv

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• Improve filtering by source

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• Filter by collections

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  b77c67d

• css tweaks

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  857766b

• nfdi logo, specify v3 zarr for zarrita

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  24309a4

Commits on Oct 11, 2024

• load_zarr_stats.py has one load_json()

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• Filter by Organism

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Commits on Oct 12, 2024

• Add filter by imagingModality

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  f3b881a

Commits on Oct 13, 2024

• Add jax_samples.csv to link to both JAX csvs

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• Filter by name and description

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  bff2c30

• Move text filter below other controls

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• Show zarr name always and description if matches textFilter

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  91a8227

Commits on Oct 14, 2024

• Remove vizarr link. Add origin link for each zarr

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• Use row shape data to pick dataset index for thumbnail

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  7d2143e

• Thumbnails larger and show spinner while loading

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  dd6345b

• Import omeLogo from public. Delete ThumbGallery

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• Merge remote-tracking branch 'origin/main' into hierarchy_browser

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  5c5074d

• Move ImageList component to new svelte file

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  656067d

• Handle virtual list scroll to also scroll the page

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  5f115dd

• Add sidebar for filters. Use select for collections

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  c9f1c85

• Use 'Original data' for link

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  322a071

• Smaller thumbnails 120px, add cols to other_samples.csv

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  abaaf65

• Add random sorting to show a mix from each collection

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  f731e17

• css tweak .imageListContainer border

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• Add a copy of Jülich's fzj.csv, without BigBrain.zarr

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Commits on Oct 15, 2024

• Add columns to a copy of crick.csv

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  4e99b70

• load_zarr_stats.py handles bf2raw series. Add local flamingo.csv with extra cols

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  1a2af45

• Add series0 column to flamingo.csv. Used for Thumbnail image path

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• Each image items links to it's sample.csv

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  ec50ddb

• Remove whitespace from n4bi.csv

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  9f12224

• Whitespace fix in crick.csv

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  f9785f6

• load_zarr_stats.py removes duplicate. jax_samples.csv links to updated samples

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  d94e589

• Improve select filtering

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  69010ce

• White background, UI makeover

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  c03dbd2

• Use AbortController to try abort chunks onDestroy()

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  c847454

Commits on Oct 16, 2024

• Fix auto-scroll back on list scroll

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  6fbc580

• Fix thumbnail aspect ratio while loading

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  1aa2837

• Don't show '0 sources' when viewing collection

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  1d19c89

• Add idr0066_samples.csv

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  c486733

• Boost contrast of thumbnails if needed

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  522ed1a

• Fix 'undefined' for csv link

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  bb8da59

• Support sorting by chunk and shard sizes

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Commits on Oct 17, 2024

• Basic popup to show larger image and rowData

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  8c3b056

• Improve formatting of image info in list

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Commits on Oct 18, 2024

• Move text filter up. New heading

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  b0c2278

• Fix postion of 'clear' button

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  ca7b7f1

Commits on Oct 20, 2024

• Move all sort options under select

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Commits on Oct 21, 2024

• Add subheading and home link to collection page

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  c294e8d

• Improve layout for wider screens. Click source X to clear

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  233d591

• Add wells and images columns to various samples.csv files

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  a85937a

• Show total bytes for sources, with plates/images in tooltip

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• Hide name and other text on small screens

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• add_about_page

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• Always show collection csv

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Commits on Oct 22, 2024

• Fix 404

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  77695c3

• use <base> element for relative URLs

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  bcc2638

• Try fix about/ link

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  107c63f

• Fix home link in Nav

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  3525b85

• cloneIndexHtmlPlugin() added to vite.config.js

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• Add ome favicon

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• Add text to /about page

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• Remove 'In the summer...' when showing a collection

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• Text filter includes zarr url

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