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    1.3k repositories

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•7•Updated Jan 9, 2025Jan 9, 2025

    • thurloe

      Public
      A simple service to store arbitrary key/value pairs
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•5•Updated Jan 9, 2025Jan 9, 2025

    • starrynight

      Public
      Library and tools to process cell painting images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•2•Updated Jan 9, 2025Jan 9, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•7•0•6•Updated Jan 9, 2025Jan 9, 2025

    • BEClust3D

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•8•Updated Jan 9, 2025Jan 9, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jan 8, 2025Jan 8, 2025

    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •99•207•7•23•Updated Jan 8, 2025Jan 8, 2025

    • dig-aggregator-methods

      Public
      Monorepo of methods implemented for the Aggregator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•7•Updated Jan 8, 2025Jan 8, 2025

    • pangenome-pipelines

      Public
      Terra WDL pipelines using the Human Pangenome Reference Graph
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      •
      Other
      •0•3•1•6•Updated Jan 8, 2025Jan 8, 2025

    • gnomad-toolbox

      Public
      This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filtering, and analysis.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•4•Updated Jan 8, 2025Jan 8, 2025

    • tgg-repo-template

      Public template
      Template for creating a new TGG methods repository
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Jan 8, 2025Jan 8, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •45•81•157•18•Updated Jan 8, 2025Jan 8, 2025

    • gnomad_qc

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •27•69•7•10•Updated Jan 8, 2025Jan 8, 2025

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      genomicsgenomesexomeshail
      Python
      •
      MIT License
      •29•91•10•8•Updated Jan 8, 2025Jan 8, 2025

    • single_cell_portal_core

      Public
      Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
      rna-seq-analysissingle-cell-genomicshuman-cell-atlas
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •26•63•0•2•Updated Jan 8, 2025Jan 8, 2025

    • dsp-appsec-infrastructure-apps

      Public
      This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      application-securityappsecsecurity-scannersecure-developmentsecurity-automationsecurity-toolsdevsecopssecurity-scanappsecurityappsec-tools
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•3•Updated Jan 8, 2025Jan 8, 2025

    • viral-pipelines

      Public
      viral-ngs: complete pipelines
      WDL
      •
      Other
      •27•61•23•15•Updated Jan 8, 2025Jan 8, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •89•179•48•5•Updated Jan 8, 2025Jan 8, 2025

    • ops-terra-utils

      Public
      Python
      •0•3•0•0•Updated Jan 8, 2025Jan 8, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •71•175•74•25•Updated Jan 8, 2025Jan 8, 2025

    • dig-indexer

      Public
      BioIndex AWS Serverless Lambda Function for indexing
      Python
      •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

    • barclay

      Public
      Command line argument parser and online documentation generation utilities for java command line programs.
      argument-parserdocumentation-tooljavadocargument-parsing
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •6•9•59•13•Updated Jan 8, 2025Jan 8, 2025

    • warp-tools

      Public
      This repository contains all containers that WARP uses.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•1•11•Updated Jan 8, 2025Jan 8, 2025

    • hidive

      Public
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•5•1•Updated Jan 8, 2025Jan 8, 2025

    • CODECsuite

      Public
      analysis pipeline for CODEC data
      C++
      •
      Other
      •6•10•0•0•Updated Jan 8, 2025Jan 8, 2025

    • Drop-seq

      Public
      Java tools for analyzing Drop-seq data
      Java
      •
      MIT License
      •34•123•21•1•Updated Jan 8, 2025Jan 8, 2025

    • seqr-loading-pipelines

      Public
      hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      •
      MIT License
      •20•22•24•3•Updated Jan 8, 2025Jan 8, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•127•30•21•Updated Jan 8, 2025Jan 8, 2025

    • bibt-sentinelone

      Public
      Broad Institute BITS Blue Team repository for bibt-sentinelone PyPI library.
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025