Repositories list

• BraLan3

  Public
  R

  •1•0•0•0•Updated Sep 14, 2022Sep 14, 2022

• fastcodeml

  Public
  Optimization strategies for fast detection of positive selection on phylogenetic trees

  C++

  •

  Other

  •0•0•0•0•Updated Sep 6, 2022Sep 6, 2022

• taxonbridge

  Public
  R package to merge the NCBI taxonomy and the GBIF backbone taxonomy

  R

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Jul 4, 2022Jul 4, 2022

• godon

  Public
  Forked from https://bitbucket.org/Davydov/godon

  Go

  •

  Other

  •0•0•0•0•Updated Nov 2, 2021Nov 2, 2021

• RRTree

  Public archive
  A program for relative-rate tests

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 1, 2021Nov 1, 2021

• bioquery

  Public
  JavaScript

  •

  Other

  •1•0•0•0•Updated Jul 9, 2021Jul 9, 2021

• Testing_the_ortholog_conjecture

  Public
  R

  •

  GNU General Public License v2.0

  •2•0•0•0•Updated Mar 26, 2021Mar 26, 2021

• A-robust-method-for-detecting-positive-selection-on-regulatory-sequences

  Public
  We present an in silico mutagenesis based approach to transcription factor binding sites evolution, based on a machine learning model of binding.

  R

  •3•0•0•0•Updated Mar 9, 2021Mar 9, 2021

• Method-matters-in-gene-family-evolution

  Public
  R

  •2•0•0•0•Updated Sep 25, 2020Sep 25, 2020

• godon-tutorial

  Public
  a demonstration of Godon usage; Godon is implementing codon model optimization written in Go

  F*

  •1•0•0•0•Updated May 31, 2020May 31, 2020

• expression-noise-across-fly-embryogenesis

  Public
  studying the conflict between precision and stochasticity of gene expression during development

  R

  •1•0•0•0•Updated Jul 12, 2019Jul 12, 2019

• Adaptive-evolution-in-late-development-and-adult

  Public
  Study the relative contributions of relaxation of purifying selection vs. increase in positive selection, in the observed high sequence divergence of genes from late development.

  R

  •1•0•0•0•Updated Jan 10, 2018Jan 10, 2018