Merge pull request #87 from psychoinformatics-de/penguins

Try capture the penguins
psychoinformatics-de · Mar 10, 2024 · bb89b7f · bb89b7f
2 parents c390838 + 952644d
commit bb89b7f
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diff --git a/src/examples/dataset-version/DatasetVersionObject-affiliation.json b/src/examples/dataset-version/DatasetVersionObject-affiliation.json
@@ -0,0 +1,27 @@
+{
+  "qualified_attribution": [
+    {
+      "agent": {
+        "meta_type": "dlco:ResearchContributorObject",
+        "name": "Jane Doe",
+        "email": "doe@example.com",
+        "affiliation": "DFG"
+      },
+      "had_role": [
+        "marcrel:aut"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:OrganizationObject",
+        "name": "Deutsche Forschungsgemeinschaft",
+        "meta_code": "DFG"
+      },
+      "had_role": [
+        "marcrel:sht"
+      ]
+    }
+  ],
+  "description": "Some key facts about the data",
+  "@type": "DatasetVersionObject"
+}
diff --git a/src/examples/dataset-version/DatasetVersionObject-affiliation.yaml b/src/examples/dataset-version/DatasetVersionObject-affiliation.yaml
@@ -0,0 +1,18 @@
+description: >-
+  Some key facts about the data
+qualified_attribution:
+  - agent:
+      meta_type: dlco:ResearchContributorObject
+      name: Jane Doe
+      email: doe@example.com
+      # reference organization by meta_code
+      affiliation: DFG
+    had_role:
+      - marcrel:aut
+  - agent:
+      meta_type: dlco:OrganizationObject
+      meta_code: DFG
+      name: Deutsche Forschungsgemeinschaft
+    had_role:
+      # Supporting host
+      - marcrel:sht
diff --git a/src/examples/dataset-version/DatasetVersionObject-customlicense.json b/src/examples/dataset-version/DatasetVersionObject-customlicense.json
@@ -0,0 +1,17 @@
+{
+  "custom_licenses": {
+    "customlicenses:not-a-good-idea": {
+      "meta_id": "customlicenses:not-a-good-idea",
+      "identifier": "Important, obey to avoid criminal charges",
+      "license_text": "All rights reserved! Permission is granted to issue a reasonable request to be given permission. License form content must be a minimum of 170 chars, so I keep going..."
+    }
+  },
+  "distribution": {
+    "meta_type": "dlco:FileContainerObject",
+    "meta_code": "./",
+    "license": "customlicenses:not-a-good-idea"
+  },
+  "license": "customlicenses:not-a-good-idea",
+  "description": "Some key facts about the data",
+  "@type": "DatasetVersionObject"
+}
diff --git a/src/examples/dataset-version/DatasetVersionObject-customlicense.yaml b/src/examples/dataset-version/DatasetVersionObject-customlicense.yaml
@@ -0,0 +1,18 @@
+description: >-
+  Some key facts about the data
+# licenses should generally be given for a concrete distribution
+distribution:
+  meta_type: dlco:FileContainerObject
+  meta_code: ./
+  license: customlicenses:not-a-good-idea
+# but we can also provide them at the Resource level
+license: customlicenses:not-a-good-idea
+# we need a place to put LicenseDocuments for custom terms that
+# cannot simply be referenced by (C)URI(E)
+custom_licenses: 
+  customlicenses:not-a-good-idea:
+    identifier: Important, obey to avoid criminal charges
+    license_text: >-
+      All rights reserved!
+      Permission is granted to issue a reasonable request to be given permission.
+      License form content must be a minimum of 170 chars, so I keep going...
diff --git a/src/examples/dataset-version/DatasetVersionObject-funding.json b/src/examples/dataset-version/DatasetVersionObject-funding.json
@@ -10,7 +10,7 @@
         "name": "SFB1451"
       },
       "had_role": [
-        "funding"
+        "schema:funding"
       ]
     }
   ],

diff --git a/src/examples/dataset-version/DatasetVersionObject-funding.yaml b/src/examples/dataset-version/DatasetVersionObject-funding.yaml
@@ -8,4 +8,4 @@ qualified_relation:
       sponsor:
         name: Deutsche Forschungsgemeinschaft
     had_role:
-      - funding
+      - schema:funding
diff --git a/src/examples/dataset-version/DatasetVersionObject-penguins.json b/src/examples/dataset-version/DatasetVersionObject-penguins.json
@@ -0,0 +1,208 @@
+{
+  "distribution": {
+    "meta_type": "dlco:FileContainerObject",
+    "meta_code": "./",
+    "has_part": [
+      {
+        "meta_type": "dlco:FileContainerObject",
+        "meta_code": "raw/",
+        "qualified_part": [
+          {
+            "relation": "e7e2be6b203a221949f05e02fcefd853",
+            "name": "adelie.csv"
+          },
+          {
+            "relation": "1549566fb97afa879dc9446edcf2015f",
+            "name": "gentoo.csv"
+          },
+          {
+            "relation": "e4b0710c69297031d63866ce8b888f25",
+            "name": "chinstrap.csv"
+          }
+        ]
+      },
+      {
+        "meta_type": "dlco:DigitalDocumentObject",
+        "meta_code": "e7e2be6b203a221949f05e02fcefd853",
+        "byte_size": 23755,
+        "checksum": {
+          "algorithm": "md5",
+          "digest": "e7e2be6b203a221949f05e02fcefd853"
+        },
+        "download_url": "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.219.3&entityid=002f3893385f710df69eeebe893144ff"
+      },
+      {
+        "meta_type": "dlco:DigitalDocumentObject",
+        "meta_code": "1549566fb97afa879dc9446edcf2015f",
+        "byte_size": 11263,
+        "checksum": {
+          "algorithm": "md5",
+          "digest": "1549566fb97afa879dc9446edcf2015f"
+        },
+        "download_url": "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.220.3&entityid=e03b43c924f226486f2f0ab6709d2381"
+      },
+      {
+        "meta_type": "dlco:DigitalDocumentObject",
+        "meta_code": "e4b0710c69297031d63866ce8b888f25",
+        "byte_size": 18872,
+        "checksum": {
+          "algorithm": "md5",
+          "digest": "e4b0710c69297031d63866ce8b888f25"
+        },
+        "download_url": "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.221.2&entityid=fe853aa8f7a59aa84cdd3197619ef462"
+      }
+    ],
+    "license": "licenses:CC0-1.0",
+    "qualified_part": [
+      {
+        "relation": "raw/",
+        "name": "raw"
+      }
+    ]
+  },
+  "identifier": [
+    "https://doi.org/10.5281/zenodo.3960218"
+  ],
+  "qualified_attribution": [
+    {
+      "agent": {
+        "meta_type": "dlco:ResearchContributorObject",
+        "name": "Allison Horst",
+        "email": "ahorst@example.com",
+        "affiliation": "UCSB",
+        "orcid": "0000-0002-6047-5564"
+      },
+      "had_role": [
+        "marcrel:aut",
+        "dpv:DataController"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:ResearchContributorObject",
+        "name": "Allison Hill",
+        "email": "ahill@example.com",
+        "affiliation": "Rstudio",
+        "orcid": "0000-0002-8082-1890"
+      },
+      "had_role": [
+        "marcrel:aut"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:ResearchContributorObject",
+        "name": "Kirsten Gorman",
+        "email": "kgorman@example.com",
+        "affiliation": "UAF",
+        "orcid": "0000-0002-0258-9264"
+      },
+      "had_role": [
+        "marcrel:aut",
+        "marcrel:cre"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:OrganizationObject",
+        "name": "UC Santa Barbara: Santa Barbara, CA, US",
+        "meta_code": "UCSB"
+      },
+      "had_role": [
+        "marcrel:sht"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:OrganizationObject",
+        "name": "RStudio: Boston, MA, US",
+        "meta_code": "RStudio"
+      },
+      "had_role": [
+        "marcrel:sht"
+      ]
+    },
+    {
+      "agent": {
+        "meta_type": "dlco:OrganizationObject",
+        "name": "University of Alaska Fairbanks: Fairbanks, AK, US",
+        "meta_code": "UAF"
+      },
+      "had_role": [
+        "marcrel:sht"
+      ]
+    }
+  ],
+  "qualified_relation": [
+    {
+      "entity": {
+        "meta_type": "dlco:GrantObject",
+        "identifier": "0217282",
+        "sponsor": {
+          "name": "NSF Office of Polar Programs"
+        },
+        "name": "LTER: PALMER, ANTARCTICA LTER: Climate Change, Ecosystem Migration and Teleconnections in an Ice-Dominated Environment",
+        "cites_as_authority": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0217282&HistoricalAwards=false"
+      },
+      "had_role": [
+        "schema:funding"
+      ]
+    },
+    {
+      "entity": {
+        "meta_type": "dlco:GrantObject",
+        "identifier": "0823101",
+        "sponsor": {
+          "name": "NSF Office of Polar Programs"
+        },
+        "name": "Palmer, Antarctica Long Term Ecological Research Project",
+        "cites_as_authority": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0823101"
+      },
+      "had_role": [
+        "schema:funding"
+      ]
+    },
+    {
+      "entity": {
+        "meta_type": "dlco:GrantObject",
+        "identifier": "0741351",
+        "sponsor": {
+          "name": "NSF Office of Polar Programs"
+        },
+        "name": "Collaborative Research: Possible Climate-induced Change in the Distribution of Pleuragramma Antarcticum on the Western Antarctic Peninsula Shelf",
+        "cites_as_authority": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0741351"
+      },
+      "had_role": [
+        "schema:funding"
+      ]
+    },
+    {
+      "entity": {
+        "meta_type": "dlco:PublicationObject",
+        "citation": "'Gorman KB, Williams TD, Fraser WR (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE 9(3): e90081.'",
+        "doi": "https://doi.org/10.1371/journal.pone.0090081"
+      },
+      "had_role": [
+        "CiTO:citesAsAuthority",
+        "CiTO:isCitedAsDataSourceBy"
+      ]
+    }
+  ],
+  "description": "The goal of palmerpenguins is to provide a great dataset for data exploration and visualization, as an alternative to iris. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station, Antarctica LTER, a member of the Long Term Ecological Research Network.",
+  "keyword": [
+    "penguins",
+    "sea ice",
+    "foraging",
+    "ecological niches",
+    "islands",
+    "antarctica",
+    "animal sexual behavior",
+    "isotopes"
+  ],
+  "landing_page": "https://github.com/allisonhorst/palmerpenguins",
+  "modified": "2020-07-16",
+  "name": "penguins",
+  "title": "Palmer Penguins",
+  "version": "0.1.0",
+  "@type": "DatasetVersionObject"
+}