prov update

src/distribution/unreleased.yaml

@@ -62,6 +62,8 @@ prefixes:
   dlthing: https://concepts.datalad.org/s/thing/unreleased/
   dpv: https://w3id.org/dpv#
   foaf: http://xmlns.com/foaf/0.1/
+  # custom prefix to use Git's SHA identifiers as schema identifiers
+  gitsha: https://concepts.datalad.org/ns/gitsha/
   linkml: https://w3id.org/linkml/
   obo: http://purl.obolibrary.org/obo/
   owl: http://www.w3.org/2002/07/owl#
@@ -97,6 +99,7 @@ emit_prefixes:
   - CiTO
   - dcat
   - dldist
+  - gitsha
   - licenses
   - marcrel
   - obo
@@ -442,37 +445,6 @@ slots:
 
 
 classes:
-  #
-  # agents
-  #
-  Person:
-    class_uri: dldist:Person
-    is_a: Agent
-    description: >-
-      Person agents are people.
-    slots:
-      - address
-      - affiliation
-      - email
-    slot_usage:
-      affiliation:
-        multivalued: true
-    exact_mappings:
-      - foaf:Person
-      - prov:Person
-
-  Organization:
-    class_uri: dldist:Organization
-    is_a: Agent
-    description: >-
-      A social or legal instititution such as a company, a society,
-      or a university.
-    slots:
-      - address
-    exact_mappings:
-      - foaf:Organization
-      - prov:Organization
-
   #
   # entities
   #

src/distribution/unreleased/examples/Distribution-datatypes.json

@@ -12,8 +12,7 @@
       "object": "obo:NCIT_C95650",
       "had_roles": [
         "obo:NCIT_C42645"
-      ],
-      "schema_type": "dlprov:EntityInfluence"
+      ]
     }
   ],
   "@type": "Distribution"

src/distribution/unreleased/examples/Resource-gitcommit.json

@@ -1,25 +1,26 @@
 {
-  "id": "https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f",
+  "id": "gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f",
   "relations": [
     {
-      "id": "https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring",
+      "id": "gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring",
       "schema_type": "dlprov:Activity",
       "type": "obo:NCIT_C25625",
-      "qualified_association": [
+      "ended_at": "2001-02-28T18:27:04+02:00",
+      "qualified_relations": [
         {
           "object": "exthisds:#gituser_doe@example.com",
           "had_roles": [
             "marcrel:aut"
           ]
         }
-      ],
-      "ended_at": "2001-02-28T18:27:04+02:00"
+      ]
     },
     {
-      "id": "https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing",
+      "id": "gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing",
       "schema_type": "dlprov:Activity",
       "type": "obo:NCIT_C42882",
-      "qualified_association": [
+      "ended_at": "2002-05-30T09:30:10+06:00",
+      "qualified_relations": [
         {
           "object": "exthisds:#gituser_doe@example.com",
           "had_roles": [
@@ -28,9 +29,8 @@
         }
       ],
       "was_informed_by": [
-        "https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring"
-      ],
-      "ended_at": "2002-05-30T09:30:10+06:00"
+        "gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring"
+      ]
     }
   ],
   "has_attributes": [
@@ -65,18 +65,19 @@
     }
   ],
   "schema_type": "dldist:Resource",
-  "qualified_derivation": [
+  "qualified_relations": [
     {
-      "object": "https://concepts.datalad.org/ns/gitsha/a52963ce19a3e3628e9976555ffc8c422b29f054",
+      "object": "gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054",
       "had_roles": [
         "owl:priorVersion"
-      ],
-      "schema_type": "dlprov:Derivation",
-      "had_activity": "obo:NCIT_C25446"
+      ]
     }
   ],
+  "was_derived_from": [
+    "gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054"
+  ],
   "was_generated_by": [
-    "https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing"
+    "gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing"
   ],
   "is_version_of": "https://concepts.datalad.org/ns/dataset-uuid/cec1da92-0dbd-4df3-8602-7c72b2d12854",
   "version": "8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f",

src/distribution/unreleased/examples/Resource-gitcommit.yaml

@@ -1,4 +1,4 @@
-id: https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f
+id: gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f
 # link to datalad dataset
 is_version_of: https://concepts.datalad.org/ns/dataset-uuid/cec1da92-0dbd-4df3-8602-7c72b2d12854
 has_attributes:
@@ -24,45 +24,41 @@ has_attributes:
 # this only *single* version label we can have without making additional
 # assumptions is the commit gitsha
 version: 8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f
-qualified_derivation:
+was_derived_from:
+  - gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054
+qualified_relations:
   # parent commit(s)
-  - object: https://concepts.datalad.org/ns/gitsha/a52963ce19a3e3628e9976555ffc8c422b29f054
-    # "change", ie. unknown what was done
-    # there are plenty of terms to drill down on the nature
-    # of the derivation
-    # - obo:NCIT_C64266: merge
-    # - obo:NCIT_C64911: add
-    had_activity: obo:NCIT_C25446
+  - object: gitsha:a52963ce19a3e3628e9976555ffc8c422b29f054
     had_roles:
       - owl:priorVersion
 relations:
   # author activity
   # this is modeled as a dedicated action so that the
   # author time can be captured as an independent property.
   # otherwise the author role could be added above
-  - id: https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring
+  - id: gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring
     schema_type: dlprov:Activity
     # "preparation"
     type: obo:NCIT_C25625
     ended_at: "2001-02-28T18:27:04+02:00"
-    qualified_association:
+    qualified_relations:
       # author of the commit
       - object: exthisds:#gituser_doe@example.com
         had_roles:
           - marcrel:aut
   # commit activity
-  - id: https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing
+  - id: gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing
     schema_type: dlprov:Activity
     # go for activity type: "release", but could also be
     # "label as such" (obo:NCIT_C64662)
     type: obo:NCIT_C42882
     ended_at: "2002-05-30T09:30:10+06:00"
-    qualified_association:
+    qualified_relations:
       # creator of the commit
       - object: exthisds:#gituser_doe@example.com
         had_roles:
           - marcrel:cre
     was_informed_by:
-      - https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring
+      - gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#authoring
 was_generated_by:
-  - https://concepts.datalad.org/ns/gitsha/8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing
+  - gitsha:8d6f033bb2a6109b2c4d64d6f27b0feb181e4d0f#committing

src/distribution/unreleased/examples/Resource-study.json

@@ -80,7 +80,7 @@
       ],
       "schema_type": "dlprov:Activity",
       "type": "obo:NCIT_C71104",
-      "qualified_association": [
+      "qualified_relations": [
         {
           "object": "exthisds:#s001",
           "had_roles": [

src/distribution/unreleased/examples/Resource-study.yaml

@@ -46,7 +46,7 @@ relations:
             value: https://eudract.ema.europa.eu
     # registered clinical trial
     type: obo:NCIT_C71104
-    qualified_association:
+    qualified_relations:
       - object: exthisds:#s001
         had_roles:
           # study participant