Merge pull request #23 from qbicsoftware/patch/verbose_errors

add verbose errors to nanopore parser
qbicsoftware · Jun 17, 2020 · a15d572 · a15d572
2 parents dc0d0ad + e3bc452
commit a15d572
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diff --git a/pom.xml b/pom.xml
@@ -10,7 +10,7 @@
   </parent>
   <artifactId>core-utils-lib</artifactId>
 
-  <version>1.4.3</version>
+  <version>1.4.4</version>
   <name>Core Utilities Library</name>
   <url>http://github.com/qbicsoftware/core-utils-lib</url>
   <description>Collection of non-Vaadin, non-Liferay utilities.</description>

diff --git a/src/main/groovy/life/qbic/utils/NanoporeParser.groovy b/src/main/groovy/life/qbic/utils/NanoporeParser.groovy
@@ -44,7 +44,8 @@ class NanoporeParser {
         } catch (ValidationException validationException) {
             log.error("Specified directory could not be validated")
             // we have to fetch all validation exceptions
-            def causes = validationException.getCausingExceptions().collect{ it.message }.join("\n")
+            def causes = validationException.getAllMessages().collect{ it }.join("\n")
+//            def causes = validationException.getCausingExceptions().collect{ it.message }.join("\n")
             log.error(causes)
             throw validationException
         }