BLD: set up conda packaging (#15)

.gitattributes

@@ -0,0 +1 @@
+q2galaxy/_version.py export-subst

.github/workflows/ci.yml

@@ -6,10 +6,10 @@ on:
   push:
     branches: [master]
 env:
-  rendered_dist: 'tests-template/core-dist/'
-  test_dist: 'tests/suite_qiime2_mystery-stew'
-  report_html: 'tests/tool_test_output.html'
-  report_json: 'tests/tool_test_output.json'
+  rendered_dist: 'rendered/tools/'
+  test_dist: 'rendered/tests/suite_qiime2_mystery-stew'
+  report_html: 'rendered/tests/tool_test_output.html'
+  report_json: 'rendered/tests/tool_test_output.json'
 
 jobs:
   lint:
@@ -42,8 +42,10 @@ jobs:
 
     - uses: actions/cache@v2
       with:
-        path: ~/.planemo/
-        key: days-since-accident-0
+        path: |
+          ~/.planemo/
+          ~/miniconda3/
+        key: days-since-accident-1
 
     - name: install QIIME 2 core distro
       run: |
@@ -67,8 +69,7 @@ jobs:
       run: |
         source "$CONDA/etc/profile.d/conda.sh"
         conda activate ../test-env
-        mkdir -p ${{ env.rendered_dist }}
-        q2galaxy template all ${{ env.rendered_dist }}
+        make tools
 
     # IF template all
     - name: publish template all
@@ -87,27 +88,45 @@ jobs:
         conda activate ../test-env
         make test
 
-    # IF make test
     - name: rendered mystery-stew
       uses: actions/upload-artifact@v2
-      if: steps.make_test.outcome == 'success'
       with:
         name: mystery-stew
         path: ${{ env.test_dist }}
+
     - name: html report
       uses: actions/upload-artifact@v2
-      if: steps.make_test.outcome == 'success'
       with:
         name: html-report
         path: ${{ env.report_html }}
+
     - name: json report
       uses: actions/upload-artifact@v2
-      if: steps.make_test.outcome == 'success'
       with:
         name: json-report
         path: ${{ env.report_json }}
-      # END IF
 
     - name: Check for failure
       if: steps.template_all.outcome == 'failure'
       run: exit 1
+
+  build-conda-package:
+    needs: test-against-galaxy
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: checkout source
+      uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+
+    - name: set up git repo for versioneer
+      run: git fetch --depth=1 origin +refs/tags/*:refs/tags/*
+
+    - uses: qiime2/action-library-packaging@alpha1
+      with:
+        package-name: q2galaxy
+        build-target: staging
+        library-token: ${{ secrets.LIBRARY_TOKEN }}

.gitignore

@@ -128,5 +128,7 @@ tags
 
 # End of https://www.gitignore.io/api/vim,python
 
-tests/**
-!tests/README.md
+rendered/tests/**
+!rendered/tests/README.md
+rendered/tools/**
+!rendered/tools/README.md

MANIFEST.in

@@ -0,0 +1,2 @@
+include versioneer.py
+include q2galaxy/_version.py

Makefile

@@ -10,22 +10,22 @@ lint:
 	q2lint
 
 stew: all
-	q2galaxy template tests ./tests/
+	q2galaxy template tests ./rendered/tests/
 
 tools: all
-	q2galaxy template all ./tests/
+	q2galaxy template all ./rendered/tools/
 
 builtins: all
-	q2galaxy template builtins ./tests/
+	q2galaxy template builtins ./rendered/tools/
 
 test: stew
 	planemo test --install_galaxy \
 	  --galaxy_branch qiime2 \
 	  --galaxy_source https://github.com/ebolyen/galaxy.git \
 	  --no_conda_auto_install \
-	  --test_output ./tests/tool_test_output.html \
-	  --test_output_json ./tests/tool_test_output.json \
-	  ./tests/suite_qiime2_mystery-stew/
+	  --test_output ./rendered/tests/tool_test_output.html \
+	  --test_output_json ./rendered/tests/tool_test_output.json \
+	  ./rendered/tests/suite_qiime2_mystery-stew/
 
 install: all
 	$(PYTHON) setup.py install
@@ -34,7 +34,8 @@ dev: all
 	pip install -e .
 
 clean: distclean
-	rm -r ./tests/suite_*
+	rm -r ./rendered/tests/suite_*; \
+	rm -r ./rendered/tools/suite_*
 
 distclean: ;
 

README.md

@@ -1,6 +1,6 @@
 # q2galaxy
 
-![](https://github.com/qiime2/q2galaxy/workflows/ci/badge.svg)
+[![](https://github.com/qiime2/q2galaxy/workflows/ci/badge.svg)](https://github.com/qiime2/q2galaxy/actions/workflows/ci.yml)
 
 An interface for generating Galaxy tool descriptions automatically from
 QIIME 2 actions.

ci/recipe/conda_build_config.yml

@@ -0,0 +1,2 @@
+python:
+  - 3.6

ci/recipe/meta.yaml

@@ -0,0 +1,36 @@
+{% set data = load_setup_py_data() %}
+{% set version = data.get('version') or 'placehold' %}
+{% set release = '.'.join(version.split('.')[:2]) %}
+
+package:
+  name: q2galaxy
+  version: {{ version }}
+
+source:
+  path: ../..
+
+build:
+  script: make install
+
+requirements:
+  host:
+    - python  {{ python }}
+    - setuptools
+
+  run:
+    - python  {{ python }}
+    - qiime2 {{ release }}.*
+    - q2-mystery-stew {{ release }}.*
+    - lxml
+
+test:
+  imports:
+    - q2galaxy
+  commands:
+    - q2galaxy template tests $(mktemp -d)
+
+
+about:
+  home: https://qiime2.org
+  license: BSD-3-Clause
+  license_family: BSD

q2galaxy/__init__.py

@@ -12,3 +12,7 @@
 __version__ = '0.0.1'  # TODO: use versioneer
 __all__ = ['template_action', 'template_plugin', 'template_builtins',
            'template_all']
+
+from ._version import get_versions
+__version__ = get_versions()['version']
+del get_versions