Welcome to the CSX46 GitHub repo

This is the public repository for Jupyter notebooks (and template notebooks) to be used for in-class work in CS446/546, Networks in Computational Biology, at Oregon State University during Winter 2020. New notebooks will be added to this repo each week during the quarter. Pull requests welcome!

Stephen Ramsey (lab.saramsey.org)

Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
setup		setup
LICENSE		LICENSE
README.md		README.md
class01_ppi_R.ipynb		class01_ppi_R.ipynb
class01_ppi_R_template.ipynb		class01_ppi_R_template.ipynb
class01_ppi_bash.ipynb		class01_ppi_bash.ipynb
class01_ppi_python3.ipynb		class01_ppi_python3.ipynb
class01_ppi_python3_template.ipynb		class01_ppi_python3_template.ipynb
class02a_igraph_R.ipynb		class02a_igraph_R.ipynb
class02a_igraph_R_template.ipynb		class02a_igraph_R_template.ipynb
class02a_igraph_python3.ipynb		class02a_igraph_python3.ipynb
class02a_igraph_python3_template.ipynb		class02a_igraph_python3_template.ipynb
class02b_storage_R.ipynb		class02b_storage_R.ipynb
class02b_storage_R_template.ipynb		class02b_storage_R_template.ipynb
class02b_storage_python3.ipynb		class02b_storage_python3.ipynb
class02b_storage_python3_template.ipynb		class02b_storage_python3_template.ipynb
class02c_find_R.ipynb		class02c_find_R.ipynb
class02c_find_R_template.ipynb		class02c_find_R_template.ipynb
class02c_find_python3.ipynb		class02c_find_python3.ipynb
class02c_find_python3_template.ipynb		class02c_find_python3_template.ipynb
class03_degdist_R.ipynb		class03_degdist_R.ipynb
class03_degdist_R_template.ipynb		class03_degdist_R_template.ipynb
class03_degdist_bash.ipynb		class03_degdist_bash.ipynb
class03_degdist_python3.ipynb		class03_degdist_python3.ipynb
class03_degdist_python3_template.ipynb		class03_degdist_python3_template.ipynb
class04_clustcoeff_R.ipynb		class04_clustcoeff_R.ipynb
class04_clustcoeff_R_template.ipynb		class04_clustcoeff_R_template.ipynb
class04_clustcoeff_python3.ipynb		class04_clustcoeff_python3.ipynb
class04_clustcoeff_python3_template.ipynb		class04_clustcoeff_python3_template.ipynb
class05_components_R.ipynb		class05_components_R.ipynb
class05_components_R_template.ipynb		class05_components_R_template.ipynb
class05_components_python3.ipynb		class05_components_python3.ipynb
class05_components_python3_template.ipynb		class05_components_python3_template.ipynb
class06_bfs_R.ipynb		class06_bfs_R.ipynb
class06_bfs_R_template.ipynb		class06_bfs_R_template.ipynb
class06_bfs_python3.ipynb		class06_bfs_python3.ipynb
class06_bfs_python3_template.ipynb		class06_bfs_python3_template.ipynb
class06_bfs_scheme.scm		class06_bfs_scheme.scm
class07a_closeness_R.ipynb		class07a_closeness_R.ipynb
class07a_closeness_python3.ipynb		class07a_closeness_python3.ipynb
class07a_closeness_python3_template.ipynb		class07a_closeness_python3_template.ipynb
class07b_pagerank_R.ipynb		class07b_pagerank_R.ipynb
class07b_pagerank_python3.ipynb		class07b_pagerank_python3.ipynb
class07b_pagerank_python3_template.ipynb		class07b_pagerank_python3_template.ipynb
class08_bc_python3.ipynb		class08_bc_python3.ipynb
class08_betweennesscentrality.pl		class08_betweennesscentrality.pl
class09_similarity_R.ipynb		class09_similarity_R.ipynb
class09_similarity_R_template.ipynb		class09_similarity_R_template.ipynb
class09_similarity_python3.ipynb		class09_similarity_python3.ipynb
class09_similarity_python3_template.ipynb		class09_similarity_python3_template.ipynb
class10_partyhubs_R.ipynb		class10_partyhubs_R.ipynb
class10_partyhubs_python3.ipynb		class10_partyhubs_python3.ipynb
class10_partyhubs_python3_template.ipynb		class10_partyhubs_python3_template.ipynb
class13_correlnet_R.ipynb		class13_correlnet_R.ipynb
class13_correlnet_python3.ipynb		class13_correlnet_python3.ipynb
class14_partialcorr_R.ipynb		class14_partialcorr_R.ipynb
class14_partialcorr_python3.ipynb		class14_partialcorr_python3.ipynb
class15_reveal_R.ipynb		class15_reveal_R.ipynb
class15_reveal_python3.ipynb		class15_reveal_python3.ipynb
class15_reveal_python3_template.ipynb		class15_reveal_python3_template.ipynb
class16_bayesnet_R.ipynb		class16_bayesnet_R.ipynb
class16_bayesnet_dataprep_R.ipynb		class16_bayesnet_dataprep_R.ipynb
class16_bayesnet_python3.ipynb		class16_bayesnet_python3.ipynb
class16_bayesnet_python3_template.ipynb		class16_bayesnet_python3_template.ipynb
class18_markovclust_R.ipynb		class18_markovclust_R.ipynb
class18_markovclust_python3.ipynb		class18_markovclust_python3.ipynb
class18_markovclust_python3_template.ipynb		class18_markovclust_python3_template.ipynb
class19_MCODE_R.ipynb		class19_MCODE_R.ipynb
class19_MCODE_python3.ipynb		class19_MCODE_python3.ipynb
class19_MCODE_python3_template.ipynb		class19_MCODE_python3_template.ipynb
class20_booleannetwork_R.ipynb		class20_booleannetwork_R.ipynb
class20_booleannetwork_python3.ipynb		class20_booleannetwork_python3.ipynb
class20_booleannetwork_python3_template.ipynb		class20_booleannetwork_python3_template.ipynb
naivebayes.R		naivebayes.R
test-R.ipynb		test-R.ipynb
test-python.ipynb		test-python.ipynb

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