visNano 0.1.1

A tool for making summary of long reads. This tools can handle FASTQ/BAM files.

Functions:

1. Work on FASTQ file

2. Work on BAM file

3. Work on BAM+BED file

Usage:

python visNano.py -h

Or,

Please see the examply.ipynb

Install:

conda create -n visnano
conda activate visnano
conda install numpy pandas tqdm matplotlib samtools

python packages:
    - numpy
    - pandas
    - tqdm
    - matplotlib
    - samtools

NOTE:

This tool is still under development. If you want to add some functions, please send a email to me