New mpileup2 draft (intended for discussions, not ready to merge!)#1842

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pd3 wants to merge 11 commits intodevelopfrom mpileup2

+1,673-20

Commits on Oct 7, 2022

Backup commit only, nothing is working, long way to go
pd3
committed

Commits on Nov 23, 2022

Commits on Nov 24, 2022

Backup commit. Compiles but not functional
pd3
committed

Commits on Nov 25, 2022

Commits on Dec 22, 2022

Backup commit
pd3
committed

Commits on Jan 16, 2023

Merge branch 'develop' into mpileup2
pd3
committed

Commits on Jun 26, 2023

backup commit: finish regions vgr $bt mpileup2 -f test/mpileup/mpileup.ref.fa test/mpileup/mpileup.1.bam test/mpileup/mpileup.2.bam -o /dev/null -r 17:10,17:16 2>&1 | less
pd3
committed

Commits on Jul 11, 2023

backup commit
pd3
committed