1.2

Official release of slideToolKit to prepare high-throughput, high-resolution scans of histological slides to analyse using CellProfiler on a high-performance computer cluster using CentOS7 or locally using macOS.

List of fixes and new features

• slideEmask: updated macOS versions
• slideNormalize: updated macOS versions
• slideQuantify: updated to work with SLURM, added slideQuantifySGE which is the legacy SGE-version (is not maintained and will probably need an update), split the jobs into five different scripts, added module loading, added anaconda environment loading
• changes to the readme
• addition of a wiki
• added slideQuantifyOSX which works on macOS Big Sur 11.5.1+
• added python scripts to extract images (slideExtract.py), create macro-images (slideMacro.py), get info (slideInfo.py), or create a thumbnail (slideThumb.py)
• updates to the guides (will fully change to a wiki)

Version 1.1

Official release of a generic toolkit to prepare high-throughput, high-resolution scans of histological slides to analyse using CellProfiler on a high-performance computer cluster using CentOS7 or locally using macOS. Fixes with slideMask and slideEmask.

Official first release of slideToolkit

First official release of a generic toolkit to prepare high-throughput, high-resolution scans of histological slides to analyse using CellProfiler on a high-performance computer cluster using CentOS7 or locally using macOS.