JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
A Snakemake pipeline for variant calling of genomic FASTQ data using GATK
A Latch Bio workflow to call DNA sequence variants
A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences
Classify samples as being either SARS-CoV-2 positive or negative, identify the strain of virus, and produce statistics about the mapping.
Kraken2 + Bracken based pipeline for classifying and quantifying microbial reads from GDC TCGA WGS data
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