Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A genome visualization python package for comparative genomics
Build a partitioned pangenome graph from microbial genomes
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
From genomes to phenotypes: Traitar, the microbial trait analyzer
🦠📇 Microbial genomes-to-report pipeline
Estimate metagenomic coverage and sequence diversity
Collection of scripts for bacterial genomics
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
A pipeline for high-quality bacterial genome construction using ONT sequencing
Microbial Genome Circular plotting tool for comparative genomics using Circos
MiGA: Microbial Genomes Atlas
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
Get microbial sequence data easier and faster
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
A comprehensive and customizable R package for microbiome analysis.
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