NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
The ImageJ framework for quantification of neuronal anatomy
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
R package providing API access to the CATMAID web image annotation tool
Bridge HHMI Janelia MouseLight Database and nat R Package
Support for working with light and electron microscopy fly brain data
Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain
Comparative Connectomics of Public and In Progress Drosophila Datasets
The Cx3D modeling framework in SciView and SNT
R client utilities for interacting with the neuPrint connectome analysis service
Support for 3D template brains used as targets for image registration
A R Shiny app for sharing and viewing lateral horn data
Support for Drosophila bridging/mirroring registrations in R
Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format
Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools
Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software
Fast C++ functions for computational neuroanatomy
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