Chanjo provides a better way to analyze coverage data in clinical sequencing.

Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

A simple Nextflow pipeline for testing the performance of sambamba vs samtools

Report summary statistics relating to quality of bam files with Nextflow

Snakemake workflow used to call peaks with Macs2

Align reads over a reference genome, filter aligned-reads, and mark duplicates