simpler paraview call

topology-tool-kit · Jun 29, 2023 · e06c548 · e06c548
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diff --git a/docs/1manifoldLearning.md b/docs/1manifoldLearning.md
@@ -18,7 +18,7 @@ This simplified data is then used as the input of the computation of [MorseSmale
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/1manifoldLearning.pvsm
+paraview states/1manifoldLearning.pvsm
 ```
 
 ## Python code

diff --git a/docs/1manifoldLearningCircles.md b/docs/1manifoldLearningCircles.md
@@ -18,7 +18,7 @@ This simplified data is then used as the input of the computation of [MorseSmale
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data)  directory and enter the following command:
 ``` bash
-paraview --state= states/1manifoldLearningCircles.pvsm
+paraview states/1manifoldLearningCircles.pvsm
 ```
 
 ## Python code

diff --git a/docs/2manifoldLearning.md b/docs/2manifoldLearning.md
@@ -18,7 +18,7 @@ This simplified data is then used as the input of the computation of [MorseSmale
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/2manifoldLearning.pvsm
+paraview states/2manifoldLearning.pvsm
 ```
 
 ## Python code

diff --git a/docs/BuiltInExample1.md b/docs/BuiltInExample1.md
@@ -19,7 +19,7 @@ Finally, the [Critical Points](https://topology-tool-kit.github.io/doc/html/clas
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/BuiltInExample1.pvsm
+paraview states/BuiltInExample1.pvsm
 ```
 
 ## Python code

diff --git a/docs/builtInExample2.md b/docs/builtInExample2.md
@@ -20,7 +20,7 @@ Lastly, we also compute the [JacobiSet](https://topology-tool-kit.github.io/doc/
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/BuiltInExample2.pvsm
+paraview states/BuiltInExample2.pvsm
 ```
 
 ## Python code

diff --git a/docs/cinemaIO.md b/docs/cinemaIO.md
@@ -20,7 +20,7 @@ The images are sliced with a plane, and each slice is visualized side-by-side us
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/cinemaIO.pvsm
+paraview states/cinemaIO.pvsm
 ```
 
 ## Python code

diff --git a/docs/clusteringKelvinHelmholtzInstabilities.md b/docs/clusteringKelvinHelmholtzInstabilities.md
@@ -153,7 +153,7 @@ clustering pipelines.
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/clusteringKelvinHelmholtzInstabilities.pvsm 
+paraview states/clusteringKelvinHelmholtzInstabilities.pvsm 
 ```
 
 ## Python code

diff --git a/docs/compactTriangulation.md b/docs/compactTriangulation.md
@@ -18,7 +18,7 @@ The example continues applying the [ScalarFieldCriticalPoints](https://topology-
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/compactTriangulation.pvsm
+paraview states/compactTriangulation.pvsm
 ```
 
 ## Python code

diff --git a/docs/contourTreeAlignment.md b/docs/contourTreeAlignment.md
@@ -27,7 +27,7 @@ The extraction is done using the [TTKExtract](https://topology-tool-kit.github.i
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/contourTreeAlignment.pvsm
+paraview states/contourTreeAlignment.pvsm
 ```
 
 ## Python code

diff --git a/docs/ctBones.md b/docs/ctBones.md
@@ -21,7 +21,7 @@ Each toe will be subdivided into two segments, precisely along the joints.
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/ctBones.pvsm
+paraview states/ctBones.pvsm
 ```
 
 ## Python code

diff --git a/docs/dragon.md b/docs/dragon.md
@@ -22,7 +22,7 @@ This simplified data is then used as the input of the computation of [ScalarFiel
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/dragon.pvsm
+paraview states/dragon.pvsm
 ```
 
 ## Python code

diff --git a/docs/geometryApproximation.md b/docs/geometryApproximation.md
@@ -13,7 +13,7 @@ A fake shadow is put on the stone mesh to give the mesh depth values. The stone
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/geometryApproximation.pvsm
+paraview states/geometryApproximation.pvsm
 ```
 
 ## Python code

diff --git a/docs/harmonicSkeleton.md b/docs/harmonicSkeleton.md
@@ -19,7 +19,7 @@ Finally, the [ReebGraph](https://topology-tool-kit.github.io/doc/html/classttkFT
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/harmonicSkeleton.pvsm
+paraview states/harmonicSkeleton.pvsm
 ```
 
 ## Python code

diff --git a/docs/imageProcessing.md b/docs/imageProcessing.md
@@ -40,7 +40,7 @@ To reproduce the above screenshot, go to your
 and enter the following command:
 
 ``` bash
-paraview --state= states/imageProcessing.pvsm
+paraview states/imageProcessing.pvsm
 ```
 
 ## Python code

diff --git a/docs/index.md b/docs/index.md
@@ -1,4 +1,4 @@
-# Welcome to the TTK Examples!
+# Welcome to the TTK Online Example Database!
 
 This website hosts a list of data analysis pipelines exemplifying the usage of [TTK](https://topology-tool-kit.github.io/) with
 [ParaView](http://paraview.org) and its Python API `pvpython`.
@@ -17,7 +17,7 @@ Each example includes:
 - a description of the inputs and outputs
 - pointers to the corresponding C++/Python documentation
 
-This documentation assumes a default TTK installation (with the `pvpython` API support enabled) and that the repository [ttk-data](https://github.com/topology-tool-kit/ttk-data) has been downloaded locally.
+This documentation assumes a default installation of the latest version of TTK (with the `pvpython` API support enabled) and that the repository [ttk-data](https://github.com/topology-tool-kit/ttk-data) has been downloaded locally.
 
 If you have any questions regarding these examples, please let us know by sending an email to the [TTK user mailing list](mailto:ttk-users@googlegroups.com)!
 

diff --git a/docs/interactionSites.md b/docs/interactionSites.md
@@ -16,7 +16,7 @@ Using topological analysis of `log(s)`, we identify an outlying minimum which is
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/interactionSites.pvsm
+paraview states/interactionSites.pvsm
 ```
 
 ## Python code

diff --git a/docs/karhunenLoveDigits64Dimensions.md b/docs/karhunenLoveDigits64Dimensions.md
@@ -22,7 +22,7 @@ corresponding ascending manifold of the Morse-Smale complex (`AscendingManifold`
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/karhunenLoveDigits64Dimensions.pvsm
+paraview states/karhunenLoveDigits64Dimensions.pvsm
 ```
 
 ## Python code

diff --git a/docs/manifoldCheck.md b/docs/manifoldCheck.md
@@ -13,7 +13,7 @@ On each of the three geometries, [ManifoldCheck](https://topology-tool-kit.githu
 
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/manifoldChecks.pvsm
+paraview states/manifoldChecks.pvsm
 ```
 
 ## Python code

diff --git a/docs/mergeTreeClustering.md b/docs/mergeTreeClustering.md
@@ -21,7 +21,7 @@ The python script computes the MDS and saves the resulting 2D points (for input
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/mergeTreeClustering.pvsm
+araview states/mergeTreeClustering.pvsm
 ```
 
 ## Python code

diff --git a/docs/mergeTreeFeatureTracking.md b/docs/mergeTreeFeatureTracking.md
@@ -16,7 +16,7 @@ The python script computes the matchings and saves the result (for each pair of
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/mergeTreeFeatureTracking.pvsm
+paraview states/mergeTreeFeatureTracking.pvsm
 ```
 
 ## Python code

diff --git a/docs/mergeTreePGA.md b/docs/mergeTreePGA.md
@@ -24,7 +24,7 @@ The python script computes the MT-PGA basis. It saves the resulting coefficients
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/mergeTreePGA.pvsm
+paraview states/mergeTreePGA.pvsm
 ```
 
 ## Python code

diff --git a/docs/mergeTreeTemporalReduction.md b/docs/mergeTreeTemporalReduction.md
@@ -15,7 +15,7 @@ The python script saves the information needed to reconstruct the trees removed
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/mergeTreeTemporalReduction.pvsm
+paraview states/mergeTreeTemporalReduction.pvsm
 ```
 
 ## Python code

diff --git a/docs/morseMolecule.md b/docs/morseMolecule.md
@@ -20,7 +20,7 @@ Lastly, 2-separatrices incident on the covalent bonds (of `SeparatrixType = 1`)
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/morseMolecule.pvsm
+paraview states/morseMolecule.pvsm
 ```
 
 ## Python code

diff --git a/docs/morsePersistence.md b/docs/morsePersistence.md
@@ -20,7 +20,7 @@ This simplified data is then used as the input of the computation of [MorseSmale
 ## ParaView
 To reproduce the above screenshot, go to your `ttk-data`  directory and enter the following command:
 ``` bash
-paraview --state= states/morsePersistence.pvsm
+paraview states/morsePersistence.pvsm
 ```
 
 ## Python code

diff --git a/docs/morseSmaleQuadrangulation.md b/docs/morseSmaleQuadrangulation.md
@@ -43,7 +43,7 @@ filter (right view on the above screenshot).
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/morseSmaleQuadrangulation.pvsm
+paraview states/morseSmaleQuadrangulation.pvsm
 ```
 
 ## Python code

diff --git a/docs/morseSmaleSegmentation_at.md b/docs/morseSmaleSegmentation_at.md
@@ -15,7 +15,7 @@ surfaces as `.vtu` files.
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/morseSmaleSegmentation_at.pvsm
+paraview states/morseSmaleSegmentation_at.pvsm
 ```
 
 ## Python code

diff --git a/docs/nestedTrackingFromOverlap.md b/docs/nestedTrackingFromOverlap.md
@@ -16,7 +16,7 @@ Finally the `ttkMeshGraph` filter generates a `vtkUnstructuredGrid` of the NTG w
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/nestedTrackingFromOverlap.py
+paraview states/nestedTrackingFromOverlap.py
 ```
 
 ## Python code

diff --git a/docs/persistenceClustering0.md b/docs/persistenceClustering0.md
@@ -19,7 +19,7 @@ corresponding ascending manifold of the Morse-Smale complex (`AscendingManifold`
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClustering0.pvsm
+paraview states/persistenceClustering0.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceClustering1.md b/docs/persistenceClustering1.md
@@ -30,7 +30,7 @@ From there a [MorseSmaleComplex](https://topology-tool-kit.github.io/doc/html/cl
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClustering1.pvsm
+paraview states/persistenceClustering1.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceClustering2.md b/docs/persistenceClustering2.md
@@ -28,7 +28,7 @@ From there a [MorseSmaleComplex](https://topology-tool-kit.github.io/doc/html/cl
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClustering2.pvsm
+paraview states/persistenceClustering2.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceClustering3.md b/docs/persistenceClustering3.md
@@ -28,7 +28,7 @@ From there a [MorseSmaleComplex](https://topology-tool-kit.github.io/doc/html/cl
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClustering3.pvsm
+paraview states/persistenceClustering3.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceClustering4.md b/docs/persistenceClustering4.md
@@ -28,7 +28,7 @@ From there a [MorseSmaleComplex](https://topology-tool-kit.github.io/doc/html/cl
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClustering4.pvsm
+paraview states/persistenceClustering4.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceClusteringGallery.md b/docs/persistenceClusteringGallery.md
@@ -27,7 +27,7 @@ From there a [MorseSmaleComplex](https://topology-tool-kit.github.io/doc/html/cl
 ## ParaView
 To reproduce the above screenshot, go to your `ttk-data`  directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceClusteringGallery.pvsm
+paraview states/persistenceClusteringGallery.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceDiagramClustering.md b/docs/persistenceDiagramClustering.md
@@ -18,7 +18,7 @@ The python script computes the clustering and saves the related classification i
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceDiagramClustering.pvsm
+paraview states/persistenceDiagramClustering.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceDiagramDistance.md b/docs/persistenceDiagramDistance.md
@@ -15,7 +15,7 @@ The python script computes the distance and prints it in the terminal output. Ad
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistenceDiagramDistance.pvsm
+paraview states/persistenceDiagramDistance.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistenceDrivenCompression.md b/docs/persistenceDrivenCompression.md
@@ -27,7 +27,7 @@ To reproduce the above screenshot, go to your
 and enter the following command:
 
 ``` bash
-paraview --state= states/persistenceDrivenCompression.pvsm
+paraview states/persistenceDrivenCompression.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_at.md b/docs/persistentGenerators_at.md
@@ -16,7 +16,7 @@ The python script simply computes the generators and saves the result as a .vtp
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_at.pvsm
+paraview states/persistentGenerators_at.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_casting.md b/docs/persistentGenerators_casting.md
@@ -16,7 +16,7 @@ The python script simply computes the cycles and saves the result as a .vtp file
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_casting.pvsm
+paraview states/persistentGenerators_casting.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_darkSky.md b/docs/persistentGenerators_darkSky.md
@@ -21,7 +21,7 @@ The python script simply computes the most persistent generators and saves the r
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_darkSky.pvsm
+paraview states/persistentGenerators_darkSky.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_fertility.md b/docs/persistentGenerators_fertility.md
@@ -16,7 +16,7 @@ The python script simply computes the cycles and saves the result as a .vtu file
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_fertility.pvsm
+paraview states/persistentGenerators_fertility.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_householdAnalysis.md b/docs/persistentGenerators_householdAnalysis.md
@@ -27,7 +27,7 @@ The python script saves the resulting point cloud, Rips complex and output cycle
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_householdAnalysis.pvsm
+paraview states/persistentGenerators_householdAnalysis.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_periodicPicture.md b/docs/persistentGenerators_periodicPicture.md
@@ -23,7 +23,7 @@ The python script saves the resulting point cloud, Rips complex and output cycle
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_periodicPicture.pvsm
+paraview states/persistentGenerators_periodicPicture.pvsm
 ```
 
 ## Python code

diff --git a/docs/persistentGenerators_skull.md b/docs/persistentGenerators_skull.md
@@ -17,7 +17,7 @@ The python script simply computes the cycles and saves the result as a .vtp file
 ## ParaView
 To reproduce the above screenshot, go to your [ttk-data](https://github.com/topology-tool-kit/ttk-data) directory and enter the following command:
 ``` bash
-paraview --state= states/persistentGenerators_skull.pvsm
+paraview states/persistentGenerators_skull.pvsm
 ```
 
 ## Python code