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Compatibility and tutorial fixes #57

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Compatibility and tutorial fixes #57

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  • Fixed functions not present in Matlab version < R2017a
  • Fixed so that all tutorials run
  • Fixed some aspects of symbolic calculation

wardsimon and others added 30 commits December 1, 2017 14:21
@wardsimon
Merge remote-tracking branch 'tsdev/master'
deb6529
@wardsimon
remove Contents
d46839a
@wardsimon
Updated tutorials and bug fixes
249824a
@wardsimon
Fix < R2017a compatability issue
b5cc5ce
Merge branch 'master' into master
fe55b6d
Merge pull request #1 from simonward86/master
2bd2655 
Fix compatibility errors
@wardsimon
Change to SpinwOrg
0075d1c
@wardsimon
Changing mex finding....
8b36eaf
@wardsimon
Fixed < R2017a path error
ad79171
@wardsimon
Merge branch 'mex_test'
85191b9
@wardsimon
Update usemex logic
73ba736
@wardsimon
Test build hooks
e4edafb
@wardsimon
Webhooks part2
eba4c98
@wardsimon
Add build badges
ac1f7aa
@wardsimon
Make readme nice
9cfdb61
@wardsimon
Fix tutorial 8
86f0a63 
Bug in tutorial 8 which has been there forever :-(
@wardsimon
Merge remote-tracking branch 'SpinW/master'
d663888
Update README
b856da2 
Spelling mistake because I can't speel.
@wardsimon
New Functionality tests
2aeb57f 
Fuctionality tests can be run with results = runspinwFunctionalityTests. Results are compared the last tsdev update. 

Former-commit-id: 8ebd41f
@wardsimon
Egrid generation fix (for twins)
a588154 
Fix indexing for n-twin systems. This makes sure the correct reference sizes are taken and elements generated.

Former-commit-id: 4666470
@wardsimon
Fix tutorials (all except those with online content)
b594b68 
Update reference results, test scripts.  

Former-commit-id: 892ad93
@wardsimon
Fix Tutorials (including online content)
b7fb224 
This is a temp fix until the new hosting comes online

Former-commit-id: 7dce6b1
@wardsimon
Testcase bugfix
e9cf96e 
Former-commit-id: b2ae09d
@wardsimon
More test fixes
50810ac 
Tutorial 9 was set to unitS instead of unit. 
Added network information switch to mitigate failiure
Remove .asv files

Former-commit-id: 44357d9
@wardsimon
Remove testing to own repo
d6a61b0 
Testing is now in https://github.com/SpinW/Testing

Former-commit-id: 16efc03
@wardsimon
Fix deployment integration
18b9f3b 
The spinW base can now be pulled directly into the standalone_dev branch. 
- Remove dev files from the repo .
- Change the version to account for deployed.

Former-commit-id: 7f3cbea
Update README
cde5fd6 
Former-commit-id: 09cd3a7
Update README.md
d1f04fb 
Former-commit-id: 7621511
@wardsimon
Add support for Model repo
02c1d81 
User supplied models can now be obtained through the new repo:
https://www.github.com/spinw/Models
Or on the MATLAB search path with files starting in 'swm_*'.
Former-commit-id: 39f2331
@wardsimon
Fix Error Messages in case of failure (sw_model)
979088a 
Error messages were not accurate in their description

Former-commit-id: 6967c92
RichardWaiteSTFC and others added 30 commits September 16, 2024 16:03
@RichardWaiteSTFC
Fix formatting in simplex
ae1500d
@RichardWaiteSTFC
Fix fitspec test - MaxIter=1 returns initial parameter
897d8a0
@RichardWaiteSTFC
Calc unweighted residuals if no/invalid errors in data struct
a8f91d1 
And add unit test
@RichardWaiteSTFC
Optional inital cost_val and return jacobuan in estimate_hessian
959c38f
@RichardWaiteSTFC
Add function to evaluate weighted residuals in cost func wrapper
65d0cfc
@RichardWaiteSTFC
Add LM minimiser (currently only supports scalar functions)
2474a3a
@RichardWaiteSTFC
Support least_squares residuals in lm4
d8b14e9
@RichardWaiteSTFC
Improve inversion for ill-conditioned matrices
7bf3529
@RichardWaiteSTFC
Add missing factors of 2
b94c4c7
@RichardWaiteSTFC
Fix bug in finite difference not resetting parameter vector
d1e8605
@RichardWaiteSTFC
Fix bug with diff step length if parameters fixed
e284a58
@RichardWaiteSTFC
Fix bug where absolute and fracatinal step confused if 1 parameter
40c9095
@RichardWaiteSTFC
Add lm4 to optimiser to unit test
b00c3d3 
2 tests omitted for lm4 - seems to be issue if parameter exactly at bound
@RichardWaiteSTFC
Update docstrings with MINUIT and lmfit references and info
42ac713 
In particular note that pfree is p_internal in lmfit
@RichardWaiteSTFC
Fix path in build_pyspinw.yml causing test failure
edf304b
@RichardWaiteSTFC
Add tolerance used as constant property
0d60de2
@RichardWaiteSTFC
Add option to pass vector of fixed params to wrapper and add tests
a7a4772
@RichardWaiteSTFC
Avoid calling @(p) p for unbound parameters
f8497bc
@RichardWaiteSTFC
Allow any non-finite value to indicate no bound
f60fc5c
@RichardWaiteSTFC
Merge pull request #204 from SpinW/implment_bounds_in_ndbase_minimisers
73f604a 
Refactor simplex to use wrapper class handling bound and fixed parameters
@RichardWaiteSTFC
Merge branch 'master' into add_new_LM_minimiser
dd978e2
@RichardWaiteSTFC
Add support for function handles returning residal arrays
44a6290 
In ndbase.lm4 and simplex optimisers. Also added tests
This allows support for ND fitting problems.
@RichardWaiteSTFC
Support resid_handle option in sw_fitpowder
3dc3f2f
@RichardWaiteSTFC
Support resid_handle in bg fitting of pwader class
520e53c 
And add test
@RichardWaiteSTFC
Correct doc-strings for simplex and lm4
e579fe2
@RichardWaiteSTFC
Change nu_dn default to 5 after benchmarking with NIST datasets
5c3f460
@RichardWaiteSTFC
Use lsqnonlin method to reset invalid parameters within bounds
8cb0a1a
@RichardWaiteSTFC
Add vary arg to simplex and lm4 (and tests)
5b72585
@RichardWaiteSTFC
Fix typos in doc string
1fc202a
@RichardWaiteSTFC
Merge pull request #208 from SpinW/add_new_LM_minimiser
7e87dee 
Add new lm minimiser
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6 participants
@wardsimon @mducle @Fellow-baka @rebeccafair @RichardWaiteSTFC @granrothge