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use container /tmp dir
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bgruening authored Jan 6, 2025
1 parent edd9403 commit 791d442
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2 changes: 2 additions & 0 deletions files/galaxy/tpv/tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -324,6 +324,8 @@ tools:
inherits: basic_docker_tool
toolshed.g2.bx.psu.edu/repos/ecology/harmonize_insitu_to_netcdf/harmonize_insitu_to_netcdf/.*:
inherits: basic_docker_tool
env:
_GALAXY_JOB_TMP_DIR: '/tmp'
# conda env not working, trying the container
toolshed.g2.bx.psu.edu/repos/imgteam/color_deconvolution/ip_color_deconvolution/.*:
inherits: basic_docker_tool
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