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docs update
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will-rowe committed May 5, 2020
1 parent 1fe7173 commit 3f1429b
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9 changes: 6 additions & 3 deletions docs/conf.py
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author = 'Will Rowe'

# The short X.Y version
version = '1.0'
version = '1.1'
# The full version, including alpha/beta/rc tags
release = '1.0.2'
release = '1.1.0'


# -- General configuration ---------------------------------------------------
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#
html_theme = 'bootstrap'
html_theme_path = sphinx_bootstrap_theme.get_html_theme_path()


def setup(app):
app.add_stylesheet("my-styles.css") # also can be a full URL
app.add_stylesheet("my-styles.css") # also can be a full URL


html_logo = "groot-logo.png"
html_theme_options = {
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1 change: 1 addition & 0 deletions docs/using-groot.md
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Expand Up @@ -91,6 +91,7 @@ Some more flags that can be used:
- `-s`: size of MinHash sketch
- `-x`: number of partitions in the LSH Ensemble index
- `-y`: maxK in the LSH Ensemble index
- `--maxSketchSpan`: max number of identical neighbouring sketches permitted in any graph traversal

> Important: GROOT can only accept MSAs as input. You can cluster your own database or use `groot get` to obtain a pre-clustered one.
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