Commands for downloading the multiple reference files required for converting and analysing CNV genotype calls from GenomeStrip/2.0 output in vcf format to Plink/1.9 format.
For Drosophila_melanogaster build dm6. Describes liftover from build dm3 files.
Primarily for Linux use but mostly transferable to mac/unix.
see http://parsecnv.sourceforge.net/
Thanks to Joe Glessner, CHOP.